Protein–RNA interactions for Protein: O60858

TRIM13, E3 ubiquitin-protein ligase TRIM13, humanhuman

Predictions only

Length 407 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM13O60858 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC23.31■■□□□ 1.32
TRIM13O60858 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
TRIM13O60858 GNAL-201ENST00000269162 1722 ntAPPRIS P1 TSL 2 BASIC23.31■■□□□ 1.32
TRIM13O60858 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
TRIM13O60858 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC23.31■■□□□ 1.32
TRIM13O60858 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC23.31■■□□□ 1.32
TRIM13O60858 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
TRIM13O60858 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
TRIM13O60858 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
TRIM13O60858 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
TRIM13O60858 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
TRIM13O60858 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
TRIM13O60858 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
TRIM13O60858 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC23.31■■□□□ 1.32
TRIM13O60858 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC23.3■■□□□ 1.32
TRIM13O60858 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
TRIM13O60858 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
TRIM13O60858 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC23.3■■□□□ 1.32
TRIM13O60858 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
TRIM13O60858 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
TRIM13O60858 RABEP2-203ENST00000544477 1645 ntTSL 2 BASIC23.3■■□□□ 1.32
TRIM13O60858 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
TRIM13O60858 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC23.29■■□□□ 1.32
TRIM13O60858 MIR3648-2-201ENST00000581792 180 ntBASIC23.29■■□□□ 1.32
TRIM13O60858 MIR3648-1-201ENST00000615959 180 ntBASIC23.29■■□□□ 1.32
TRIM13O60858 GDI1-215ENST00000630693 786 ntTSL 4 BASIC23.29■■□□□ 1.32
TRIM13O60858 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
TRIM13O60858 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC23.28■■□□□ 1.32
TRIM13O60858 AC141586.4-201ENST00000624558 1573 ntBASIC23.28■■□□□ 1.32
TRIM13O60858 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
TRIM13O60858 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC23.28■■□□□ 1.32
TRIM13O60858 RPARP-AS1-205ENST00000596045 431 ntTSL 3 BASIC23.28■■□□□ 1.32
TRIM13O60858 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC23.28■■□□□ 1.32
TRIM13O60858 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC23.28■■□□□ 1.32
TRIM13O60858 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC23.28■■□□□ 1.32
TRIM13O60858 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
TRIM13O60858 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC23.27■■□□□ 1.32
TRIM13O60858 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
TRIM13O60858 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
TRIM13O60858 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
TRIM13O60858 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC23.27■■□□□ 1.32
TRIM13O60858 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
TRIM13O60858 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
TRIM13O60858 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
TRIM13O60858 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC23.27■■□□□ 1.32
TRIM13O60858 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC23.26■■□□□ 1.31
TRIM13O60858 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC23.26■■□□□ 1.31
TRIM13O60858 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
TRIM13O60858 PFN2-211ENST00000489155 636 ntTSL 4 BASIC23.26■■□□□ 1.31
TRIM13O60858 METRNL-202ENST00000570778 967 ntTSL 5 BASIC23.26■■□□□ 1.31
TRIM13O60858 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC23.26■■□□□ 1.31
TRIM13O60858 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
TRIM13O60858 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC23.26■■□□□ 1.31
TRIM13O60858 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC23.25■■□□□ 1.31
TRIM13O60858 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
TRIM13O60858 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
TRIM13O60858 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC23.25■■□□□ 1.31
TRIM13O60858 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC23.25■■□□□ 1.31
TRIM13O60858 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
TRIM13O60858 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
TRIM13O60858 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC23.24■■□□□ 1.31
TRIM13O60858 MACF1-219ENST00000484793 834 ntTSL 2 BASIC23.24■■□□□ 1.31
TRIM13O60858 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC23.24■■□□□ 1.31
TRIM13O60858 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC23.24■■□□□ 1.31
TRIM13O60858 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
TRIM13O60858 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
TRIM13O60858 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC23.24■■□□□ 1.31
TRIM13O60858 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
TRIM13O60858 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC23.23■■□□□ 1.31
TRIM13O60858 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC23.23■■□□□ 1.31
TRIM13O60858 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC23.23■■□□□ 1.31
TRIM13O60858 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
TRIM13O60858 AC025884.2-201ENST00000553429 711 ntBASIC23.23■■□□□ 1.31
TRIM13O60858 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC23.23■■□□□ 1.31
TRIM13O60858 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC23.23■■□□□ 1.31
TRIM13O60858 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC23.23■■□□□ 1.31
TRIM13O60858 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
TRIM13O60858 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
TRIM13O60858 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
TRIM13O60858 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
TRIM13O60858 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC23.23■■□□□ 1.31
TRIM13O60858 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC23.23■■□□□ 1.31
TRIM13O60858 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
TRIM13O60858 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
TRIM13O60858 ABHD17AP4-201ENST00000411545 909 ntBASIC23.22■■□□□ 1.31
TRIM13O60858 AL157400.5-201ENST00000507624 621 ntBASIC23.22■■□□□ 1.31
TRIM13O60858 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
TRIM13O60858 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC23.22■■□□□ 1.31
TRIM13O60858 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
TRIM13O60858 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC23.22■■□□□ 1.31
TRIM13O60858 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
TRIM13O60858 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC23.22■■□□□ 1.31
TRIM13O60858 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC23.22■■□□□ 1.31
TRIM13O60858 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
TRIM13O60858 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC23.21■■□□□ 1.31
TRIM13O60858 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
TRIM13O60858 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
TRIM13O60858 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
TRIM13O60858 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC23.21■■□□□ 1.31
TRIM13O60858 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
Retrieved 100 of 98,524 protein–RNA pairs in 35.8 ms