Protein–RNA interactions for Protein: O43542

XRCC3, DNA repair protein XRCC3, humanhuman

Predictions only

Length 346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC3O43542 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC20.29■□□□□ 0.84
XRCC3O43542 AC021231.2-201ENST00000594613 730 ntBASIC20.29■□□□□ 0.84
XRCC3O43542 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
XRCC3O43542 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
XRCC3O43542 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC20.29■□□□□ 0.84
XRCC3O43542 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
XRCC3O43542 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
XRCC3O43542 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
XRCC3O43542 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
XRCC3O43542 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC20.28■□□□□ 0.84
XRCC3O43542 AC044849.2-201ENST00000606596 710 ntBASIC20.28■□□□□ 0.84
XRCC3O43542 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
XRCC3O43542 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC20.28■□□□□ 0.84
XRCC3O43542 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC20.27■□□□□ 0.84
XRCC3O43542 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
XRCC3O43542 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
XRCC3O43542 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
XRCC3O43542 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
XRCC3O43542 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
XRCC3O43542 MIR219A2-201ENST00000608502 1504 ntBASIC20.27■□□□□ 0.83
XRCC3O43542 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.83
XRCC3O43542 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
XRCC3O43542 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
XRCC3O43542 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
XRCC3O43542 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
XRCC3O43542 BOD1-206ENST00000480951 814 ntTSL 2 BASIC20.26■□□□□ 0.83
XRCC3O43542 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
XRCC3O43542 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
XRCC3O43542 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
XRCC3O43542 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC20.26■□□□□ 0.83
XRCC3O43542 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
XRCC3O43542 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
XRCC3O43542 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
XRCC3O43542 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
XRCC3O43542 AL359258.2-201ENST00000564063 1566 ntBASIC20.25■□□□□ 0.83
XRCC3O43542 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
XRCC3O43542 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC20.25■□□□□ 0.83
XRCC3O43542 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
XRCC3O43542 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
XRCC3O43542 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
XRCC3O43542 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
XRCC3O43542 AC008813.1-201ENST00000536597 885 ntBASIC20.25■□□□□ 0.83
XRCC3O43542 AC004812.2-201ENST00000611079 2094 ntBASIC20.25■□□□□ 0.83
XRCC3O43542 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
XRCC3O43542 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC20.25■□□□□ 0.83
XRCC3O43542 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
XRCC3O43542 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
XRCC3O43542 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
XRCC3O43542 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
XRCC3O43542 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC20.24■□□□□ 0.83
XRCC3O43542 AC148477.6-201ENST00000623746 465 ntBASIC20.24■□□□□ 0.83
XRCC3O43542 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
XRCC3O43542 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
XRCC3O43542 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
XRCC3O43542 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
XRCC3O43542 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
XRCC3O43542 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
XRCC3O43542 GNAL-201ENST00000269162 1722 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
XRCC3O43542 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
XRCC3O43542 CHML-204ENST00000638121 920 ntTSL 2 BASIC20.23■□□□□ 0.83
XRCC3O43542 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
XRCC3O43542 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
XRCC3O43542 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
XRCC3O43542 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
XRCC3O43542 RABEP2-203ENST00000544477 1645 ntTSL 2 BASIC20.23■□□□□ 0.83
XRCC3O43542 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
XRCC3O43542 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
XRCC3O43542 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
XRCC3O43542 KCNG2-201ENST00000316249 1401 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
XRCC3O43542 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
XRCC3O43542 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
XRCC3O43542 DUX4L29-201ENST00000425409 679 ntBASIC20.22■□□□□ 0.83
XRCC3O43542 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC20.22■□□□□ 0.83
XRCC3O43542 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC20.22■□□□□ 0.83
XRCC3O43542 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
XRCC3O43542 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC20.22■□□□□ 0.83
XRCC3O43542 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
XRCC3O43542 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC20.21■□□□□ 0.83
XRCC3O43542 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC20.21■□□□□ 0.83
XRCC3O43542 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
XRCC3O43542 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
XRCC3O43542 NRG1-221ENST00000614767 762 ntTSL 5 BASIC20.2■□□□□ 0.82
XRCC3O43542 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
XRCC3O43542 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
XRCC3O43542 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
XRCC3O43542 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
XRCC3O43542 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC20.19■□□□□ 0.82
XRCC3O43542 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
XRCC3O43542 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
XRCC3O43542 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
XRCC3O43542 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
XRCC3O43542 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC20.19■□□□□ 0.82
XRCC3O43542 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
XRCC3O43542 CDC34-201ENST00000215574 1471 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
XRCC3O43542 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC20.18■□□□□ 0.82
XRCC3O43542 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC20.18■□□□□ 0.82
XRCC3O43542 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
XRCC3O43542 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC20.18■□□□□ 0.82
XRCC3O43542 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC20.18■□□□□ 0.82
XRCC3O43542 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 21.8 ms