Protein–RNA interactions for Protein: A0A1B0GU29

SMIM28, Small integral membrane protein 28, humanhuman

Predictions only

Length 152 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMIM28A0A1B0GU29 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC25.69■■□□□ 1.7
SMIM28A0A1B0GU29 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC25.68■■□□□ 1.7
SMIM28A0A1B0GU29 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
SMIM28A0A1B0GU29 AC010501.1-201ENST00000606270 1962 ntBASIC25.68■■□□□ 1.7
SMIM28A0A1B0GU29 KRT18P24-201ENST00000344739 1156 ntBASIC25.68■■□□□ 1.7
SMIM28A0A1B0GU29 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC25.68■■□□□ 1.7
SMIM28A0A1B0GU29 AL592295.1-201ENST00000400984 884 ntBASIC25.68■■□□□ 1.7
SMIM28A0A1B0GU29 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC25.68■■□□□ 1.7
SMIM28A0A1B0GU29 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC25.68■■□□□ 1.7
SMIM28A0A1B0GU29 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC25.68■■□□□ 1.7
SMIM28A0A1B0GU29 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
SMIM28A0A1B0GU29 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC25.68■■□□□ 1.7
SMIM28A0A1B0GU29 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
SMIM28A0A1B0GU29 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC25.67■■□□□ 1.7
SMIM28A0A1B0GU29 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC25.67■■□□□ 1.7
SMIM28A0A1B0GU29 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC25.67■■□□□ 1.7
SMIM28A0A1B0GU29 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
SMIM28A0A1B0GU29 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
SMIM28A0A1B0GU29 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC25.67■■□□□ 1.7
SMIM28A0A1B0GU29 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC25.67■■□□□ 1.7
SMIM28A0A1B0GU29 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC25.66■■□□□ 1.7
SMIM28A0A1B0GU29 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC25.66■■□□□ 1.7
SMIM28A0A1B0GU29 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
SMIM28A0A1B0GU29 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
SMIM28A0A1B0GU29 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
SMIM28A0A1B0GU29 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
SMIM28A0A1B0GU29 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
SMIM28A0A1B0GU29 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
SMIM28A0A1B0GU29 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
SMIM28A0A1B0GU29 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC25.64■■□□□ 1.7
SMIM28A0A1B0GU29 NPB-202ENST00000573081 2154 ntAPPRIS ALT2 BASIC25.64■■□□□ 1.7
SMIM28A0A1B0GU29 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
SMIM28A0A1B0GU29 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC25.64■■□□□ 1.7
SMIM28A0A1B0GU29 HES6-204ENST00000409182 863 ntTSL 2 BASIC25.64■■□□□ 1.7
SMIM28A0A1B0GU29 RNF146-205ENST00000477776 762 ntTSL 3 BASIC25.64■■□□□ 1.7
SMIM28A0A1B0GU29 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC25.64■■□□□ 1.69
SMIM28A0A1B0GU29 SNTB1-202ENST00000517992 2273 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
SMIM28A0A1B0GU29 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
SMIM28A0A1B0GU29 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
SMIM28A0A1B0GU29 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
SMIM28A0A1B0GU29 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC25.63■■□□□ 1.69
SMIM28A0A1B0GU29 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
SMIM28A0A1B0GU29 AC120024.1-201ENST00000562672 995 ntBASIC25.63■■□□□ 1.69
SMIM28A0A1B0GU29 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC25.63■■□□□ 1.69
SMIM28A0A1B0GU29 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC25.63■■□□□ 1.69
SMIM28A0A1B0GU29 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC25.62■■□□□ 1.69
SMIM28A0A1B0GU29 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC25.62■■□□□ 1.69
SMIM28A0A1B0GU29 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
SMIM28A0A1B0GU29 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC25.62■■□□□ 1.69
SMIM28A0A1B0GU29 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC25.62■■□□□ 1.69
SMIM28A0A1B0GU29 OR2A1-AS1-204ENST00000470435 602 ntBASIC25.62■■□□□ 1.69
SMIM28A0A1B0GU29 THA1P-201ENST00000590384 1145 ntBASIC25.62■■□□□ 1.69
SMIM28A0A1B0GU29 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC25.62■■□□□ 1.69
SMIM28A0A1B0GU29 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC25.62■■□□□ 1.69
SMIM28A0A1B0GU29 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC25.62■■□□□ 1.69
SMIM28A0A1B0GU29 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
SMIM28A0A1B0GU29 AC097639.1-201ENST00000565519 1891 ntBASIC25.62■■□□□ 1.69
SMIM28A0A1B0GU29 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
SMIM28A0A1B0GU29 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
SMIM28A0A1B0GU29 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
SMIM28A0A1B0GU29 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
SMIM28A0A1B0GU29 ADAMTS13-203ENST00000371910 1074 ntTSL 1 (best) BASIC25.61■■□□□ 1.69
SMIM28A0A1B0GU29 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC25.61■■□□□ 1.69
SMIM28A0A1B0GU29 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC25.61■■□□□ 1.69
SMIM28A0A1B0GU29 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
SMIM28A0A1B0GU29 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC25.6■■□□□ 1.69
SMIM28A0A1B0GU29 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC25.6■■□□□ 1.69
SMIM28A0A1B0GU29 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
SMIM28A0A1B0GU29 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
SMIM28A0A1B0GU29 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC25.59■■□□□ 1.69
SMIM28A0A1B0GU29 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC25.59■■□□□ 1.69
SMIM28A0A1B0GU29 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC25.59■■□□□ 1.69
SMIM28A0A1B0GU29 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC25.59■■□□□ 1.69
SMIM28A0A1B0GU29 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
SMIM28A0A1B0GU29 AC239859.2-201ENST00000444165 318 ntBASIC25.58■■□□□ 1.69
SMIM28A0A1B0GU29 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC25.58■■□□□ 1.69
SMIM28A0A1B0GU29 FOXO3B-201ENST00000395675 1928 ntBASIC25.57■■□□□ 1.68
SMIM28A0A1B0GU29 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
SMIM28A0A1B0GU29 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC25.57■■□□□ 1.68
SMIM28A0A1B0GU29 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC25.57■■□□□ 1.68
SMIM28A0A1B0GU29 GUSBP5-201ENST00000418136 578 ntBASIC25.57■■□□□ 1.68
SMIM28A0A1B0GU29 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC25.57■■□□□ 1.68
SMIM28A0A1B0GU29 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
SMIM28A0A1B0GU29 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC25.57■■□□□ 1.68
SMIM28A0A1B0GU29 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
SMIM28A0A1B0GU29 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC25.56■■□□□ 1.68
SMIM28A0A1B0GU29 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC25.56■■□□□ 1.68
SMIM28A0A1B0GU29 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
SMIM28A0A1B0GU29 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
SMIM28A0A1B0GU29 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC25.56■■□□□ 1.68
SMIM28A0A1B0GU29 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC25.56■■□□□ 1.68
SMIM28A0A1B0GU29 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC25.56■■□□□ 1.68
SMIM28A0A1B0GU29 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC25.56■■□□□ 1.68
SMIM28A0A1B0GU29 Z92544.1-202ENST00000571933 1220 ntBASIC25.56■■□□□ 1.68
SMIM28A0A1B0GU29 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC25.56■■□□□ 1.68
SMIM28A0A1B0GU29 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
SMIM28A0A1B0GU29 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
SMIM28A0A1B0GU29 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC25.56■■□□□ 1.68
SMIM28A0A1B0GU29 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC25.56■■□□□ 1.68
SMIM28A0A1B0GU29 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC25.55■■□□□ 1.68
Retrieved 100 of 98,524 protein–RNA pairs in 354.1 ms