Protein–RNA interactions for Protein: Q9NXB0

MKS1, Meckel syndrome type 1 protein, humanhuman

Predictions only

Length 559 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1Q9NXB0 EGLN3-201ENST00000250457 2709 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
MKS1Q9NXB0 MLKL-202ENST00000308807 2523 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
MKS1Q9NXB0 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
MKS1Q9NXB0 PAK6-203ENST00000542403 2540 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
MKS1Q9NXB0 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
MKS1Q9NXB0 NKPD1-201ENST00000317951 4233 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
MKS1Q9NXB0 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
MKS1Q9NXB0 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
MKS1Q9NXB0 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
MKS1Q9NXB0 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC16.25■□□□□ 0.19
MKS1Q9NXB0 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
MKS1Q9NXB0 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
MKS1Q9NXB0 GDF6-201ENST00000287020 3701 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
MKS1Q9NXB0 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC16.25■□□□□ 0.19
MKS1Q9NXB0 EPB41L4A-AS1-201ENST00000413221 2969 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
MKS1Q9NXB0 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC16.25■□□□□ 0.19
MKS1Q9NXB0 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
MKS1Q9NXB0 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
MKS1Q9NXB0 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
MKS1Q9NXB0 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC16.25■□□□□ 0.19
MKS1Q9NXB0 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
MKS1Q9NXB0 LSM5-204ENST00000409909 740 ntTSL 2 BASIC16.25■□□□□ 0.19
MKS1Q9NXB0 MTRF1LP2-201ENST00000506027 1122 ntBASIC16.25■□□□□ 0.19
MKS1Q9NXB0 CIPC-205ENST00000555437 566 ntTSL 3 BASIC16.25■□□□□ 0.19
MKS1Q9NXB0 RIN3-211ENST00000557762 517 ntTSL 3 BASIC16.25■□□□□ 0.19
MKS1Q9NXB0 MIR3909-201ENST00000579518 119 ntBASIC16.25■□□□□ 0.19
MKS1Q9NXB0 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
MKS1Q9NXB0 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
MKS1Q9NXB0 MYB-201ENST00000316528 3571 ntTSL 5 BASIC16.25■□□□□ 0.19
MKS1Q9NXB0 MYB-241ENST00000616088 3573 ntTSL 5 BASIC16.25■□□□□ 0.19
MKS1Q9NXB0 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
MKS1Q9NXB0 DIO3OS-208ENST00000556120 2473 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
MKS1Q9NXB0 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC16.25■□□□□ 0.19
MKS1Q9NXB0 ZNF131-214ENST00000509634 3340 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
MKS1Q9NXB0 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC16.25■□□□□ 0.19
MKS1Q9NXB0 IL12RB2-205ENST00000541374 3849 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
MKS1Q9NXB0 GPR161-202ENST00000367835 2400 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
MKS1Q9NXB0 ARHGAP9-201ENST00000393791 2597 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
MKS1Q9NXB0 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
MKS1Q9NXB0 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC16.24■□□□□ 0.19
MKS1Q9NXB0 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
MKS1Q9NXB0 STAT3-201ENST00000264657 5047 ntAPPRIS P4 TSL 1 (best) BASIC16.24■□□□□ 0.19
MKS1Q9NXB0 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
MKS1Q9NXB0 HNRNPA1-202ENST00000340913 1842 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
MKS1Q9NXB0 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC16.24■□□□□ 0.19
MKS1Q9NXB0 GBA2-202ENST00000378094 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
MKS1Q9NXB0 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC16.24■□□□□ 0.19
MKS1Q9NXB0 TRPC6-206ENST00000532133 2648 ntTSL 5 BASIC16.24■□□□□ 0.19
MKS1Q9NXB0 TLE4-204ENST00000376537 2793 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
MKS1Q9NXB0 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC16.24■□□□□ 0.19
MKS1Q9NXB0 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC16.24■□□□□ 0.19
MKS1Q9NXB0 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
MKS1Q9NXB0 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
MKS1Q9NXB0 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
MKS1Q9NXB0 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC16.24■□□□□ 0.19
MKS1Q9NXB0 AC245100.5-201ENST00000452108 331 ntBASIC16.24■□□□□ 0.19
MKS1Q9NXB0 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
MKS1Q9NXB0 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC16.24■□□□□ 0.19
MKS1Q9NXB0 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC16.24■□□□□ 0.19
MKS1Q9NXB0 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC16.24■□□□□ 0.19
MKS1Q9NXB0 AC021097.1-201ENST00000607902 574 ntBASIC16.24■□□□□ 0.19
MKS1Q9NXB0 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC16.24■□□□□ 0.19
MKS1Q9NXB0 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC16.24■□□□□ 0.19
MKS1Q9NXB0 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
MKS1Q9NXB0 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
MKS1Q9NXB0 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC16.24■□□□□ 0.19
MKS1Q9NXB0 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
MKS1Q9NXB0 UNC119B-201ENST00000344651 4404 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
MKS1Q9NXB0 GHDC-203ENST00000428494 2518 ntTSL 5 BASIC16.24■□□□□ 0.19
MKS1Q9NXB0 LYPLA1-214ENST00000618741 2526 ntTSL 5 BASIC16.24■□□□□ 0.19
MKS1Q9NXB0 MASTL-203ENST00000375946 3623 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
MKS1Q9NXB0 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
MKS1Q9NXB0 THEMIS2-202ENST00000373921 2687 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
MKS1Q9NXB0 PRAL-201ENST00000624952 3286 ntBASIC16.24■□□□□ 0.19
MKS1Q9NXB0 KIF13B-206ENST00000524189 8745 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
MKS1Q9NXB0 ZNF620-202ENST00000418905 2022 ntTSL 2 BASIC16.24■□□□□ 0.19
MKS1Q9NXB0 MYH14-202ENST00000376970 6787 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
MKS1Q9NXB0 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC16.24■□□□□ 0.19
MKS1Q9NXB0 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
MKS1Q9NXB0 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC16.24■□□□□ 0.19
MKS1Q9NXB0 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
MKS1Q9NXB0 AC092718.8-201ENST00000640345 2892 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
MKS1Q9NXB0 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
MKS1Q9NXB0 RAP2C-201ENST00000342983 3896 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
MKS1Q9NXB0 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
MKS1Q9NXB0 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
MKS1Q9NXB0 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
MKS1Q9NXB0 AC006460.2-201ENST00000638173 4744 ntTSL 5 BASIC16.23■□□□□ 0.19
MKS1Q9NXB0 PROZ-202ENST00000375547 1488 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
MKS1Q9NXB0 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
MKS1Q9NXB0 PLAGL1-208ENST00000437412 2640 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
MKS1Q9NXB0 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
MKS1Q9NXB0 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
MKS1Q9NXB0 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC16.23■□□□□ 0.19
MKS1Q9NXB0 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC16.23■□□□□ 0.19
MKS1Q9NXB0 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC16.23■□□□□ 0.19
MKS1Q9NXB0 HAUS4P1-201ENST00000406739 1145 ntBASIC16.23■□□□□ 0.19
MKS1Q9NXB0 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC16.23■□□□□ 0.19
MKS1Q9NXB0 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC16.23■□□□□ 0.19
MKS1Q9NXB0 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC16.23■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms