Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
TRIM39Q9HCM9 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
TRIM39Q9HCM9 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
TRIM39Q9HCM9 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC16.36■□□□□ 0.21
TRIM39Q9HCM9 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC16.36■□□□□ 0.21
TRIM39Q9HCM9 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC16.36■□□□□ 0.21
TRIM39Q9HCM9 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
TRIM39Q9HCM9 SPCS2P4-201ENST00000436160 681 ntBASIC16.36■□□□□ 0.21
TRIM39Q9HCM9 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC16.36■□□□□ 0.21
TRIM39Q9HCM9 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
TRIM39Q9HCM9 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC16.36■□□□□ 0.21
TRIM39Q9HCM9 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC16.36■□□□□ 0.21
TRIM39Q9HCM9 KRT8P23-201ENST00000560090 1207 ntBASIC16.36■□□□□ 0.21
TRIM39Q9HCM9 LINC01225-203ENST00000563550 1244 ntBASIC16.36■□□□□ 0.21
TRIM39Q9HCM9 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC16.36■□□□□ 0.21
TRIM39Q9HCM9 AC008267.7-201ENST00000624570 1194 ntBASIC16.36■□□□□ 0.21
TRIM39Q9HCM9 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC16.36■□□□□ 0.21
TRIM39Q9HCM9 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
TRIM39Q9HCM9 COLGALT2-201ENST00000361927 5177 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
TRIM39Q9HCM9 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
TRIM39Q9HCM9 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC16.36■□□□□ 0.21
TRIM39Q9HCM9 MDFIC-202ENST00000393486 4393 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
TRIM39Q9HCM9 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC16.36■□□□□ 0.21
TRIM39Q9HCM9 ANKRD26P3-201ENST00000454044 2748 ntBASIC16.36■□□□□ 0.21
TRIM39Q9HCM9 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
TRIM39Q9HCM9 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
TRIM39Q9HCM9 GGT4P-201ENST00000623672 1708 ntBASIC16.36■□□□□ 0.21
TRIM39Q9HCM9 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC16.36■□□□□ 0.21
TRIM39Q9HCM9 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
TRIM39Q9HCM9 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC16.36■□□□□ 0.21
TRIM39Q9HCM9 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
TRIM39Q9HCM9 KL-201ENST00000380099 5006 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
TRIM39Q9HCM9 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
TRIM39Q9HCM9 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
TRIM39Q9HCM9 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
TRIM39Q9HCM9 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC16.35■□□□□ 0.21
TRIM39Q9HCM9 P2RX5-TAX1BP3-201ENST00000550383 5905 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
TRIM39Q9HCM9 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
TRIM39Q9HCM9 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
TRIM39Q9HCM9 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC16.35■□□□□ 0.21
TRIM39Q9HCM9 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC16.35■□□□□ 0.21
TRIM39Q9HCM9 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC16.35■□□□□ 0.21
TRIM39Q9HCM9 RIMS1-210ENST00000491071 5047 ntTSL 5 BASIC16.35■□□□□ 0.21
TRIM39Q9HCM9 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
TRIM39Q9HCM9 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
TRIM39Q9HCM9 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
TRIM39Q9HCM9 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
TRIM39Q9HCM9 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
TRIM39Q9HCM9 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC16.35■□□□□ 0.21
TRIM39Q9HCM9 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
TRIM39Q9HCM9 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
TRIM39Q9HCM9 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
TRIM39Q9HCM9 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
TRIM39Q9HCM9 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
TRIM39Q9HCM9 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC16.35■□□□□ 0.21
TRIM39Q9HCM9 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
TRIM39Q9HCM9 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
TRIM39Q9HCM9 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC16.35■□□□□ 0.21
TRIM39Q9HCM9 IGHV3-62-201ENST00000520057 340 ntBASIC16.35■□□□□ 0.21
TRIM39Q9HCM9 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC16.35■□□□□ 0.21
TRIM39Q9HCM9 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
TRIM39Q9HCM9 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC16.35■□□□□ 0.21
TRIM39Q9HCM9 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC16.35■□□□□ 0.21
TRIM39Q9HCM9 CA12-203ENST00000422263 2556 ntTSL 2 BASIC16.35■□□□□ 0.21
TRIM39Q9HCM9 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
TRIM39Q9HCM9 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC16.35■□□□□ 0.21
TRIM39Q9HCM9 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
TRIM39Q9HCM9 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
TRIM39Q9HCM9 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC16.35■□□□□ 0.21
TRIM39Q9HCM9 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
TRIM39Q9HCM9 GCK-202ENST00000345378 2421 ntTSL 2 BASIC16.35■□□□□ 0.21
TRIM39Q9HCM9 NRG1-202ENST00000356819 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
TRIM39Q9HCM9 ADARB2-203ENST00000381312 8421 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
TRIM39Q9HCM9 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC16.35■□□□□ 0.21
TRIM39Q9HCM9 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC16.35■□□□□ 0.21
TRIM39Q9HCM9 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
TRIM39Q9HCM9 MON2-201ENST00000393629 5612 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
TRIM39Q9HCM9 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC16.34■□□□□ 0.21
TRIM39Q9HCM9 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
TRIM39Q9HCM9 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC16.34■□□□□ 0.21
TRIM39Q9HCM9 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC16.34■□□□□ 0.21
TRIM39Q9HCM9 ST3GAL2-201ENST00000342907 4450 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
TRIM39Q9HCM9 HGNC:18790-203ENST00000433139 2254 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
TRIM39Q9HCM9 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
TRIM39Q9HCM9 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC16.34■□□□□ 0.21
TRIM39Q9HCM9 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
TRIM39Q9HCM9 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
TRIM39Q9HCM9 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
TRIM39Q9HCM9 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC16.34■□□□□ 0.21
TRIM39Q9HCM9 AC005237.2-201ENST00000434368 219 ntBASIC16.34■□□□□ 0.21
TRIM39Q9HCM9 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC16.34■□□□□ 0.21
TRIM39Q9HCM9 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC16.34■□□□□ 0.21
TRIM39Q9HCM9 RNF34-208ENST00000555076 593 ntTSL 3 BASIC16.34■□□□□ 0.21
TRIM39Q9HCM9 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC16.34■□□□□ 0.21
TRIM39Q9HCM9 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC16.34■□□□□ 0.21
TRIM39Q9HCM9 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC16.34■□□□□ 0.21
TRIM39Q9HCM9 AC027307.2-201ENST00000591252 911 ntBASIC16.34■□□□□ 0.21
TRIM39Q9HCM9 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
TRIM39Q9HCM9 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC16.34■□□□□ 0.21
TRIM39Q9HCM9 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 25.8 ms