Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC18.02■□□□□ 0.48
TRAIPQ9BWF2 AC097493.3-201ENST00000509725 367 ntBASIC18.02■□□□□ 0.48
TRAIPQ9BWF2 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
TRAIPQ9BWF2 AP002490.2-201ENST00000524791 560 ntBASIC18.02■□□□□ 0.48
TRAIPQ9BWF2 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC18.02■□□□□ 0.48
TRAIPQ9BWF2 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC18.02■□□□□ 0.48
TRAIPQ9BWF2 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
TRAIPQ9BWF2 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
TRAIPQ9BWF2 AC007967.4-201ENST00000614700 386 ntBASIC18.02■□□□□ 0.48
TRAIPQ9BWF2 ZBTB7C-201ENST00000535628 4818 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
TRAIPQ9BWF2 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.48
TRAIPQ9BWF2 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.47
TRAIPQ9BWF2 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
TRAIPQ9BWF2 LARP4B-211ENST00000612396 8546 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.47
TRAIPQ9BWF2 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
TRAIPQ9BWF2 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC18.02■□□□□ 0.47
TRAIPQ9BWF2 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.47
TRAIPQ9BWF2 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC18.02■□□□□ 0.47
TRAIPQ9BWF2 UBALD1-205ENST00000590891 2641 ntBASIC18.02■□□□□ 0.47
TRAIPQ9BWF2 AL671710.1-201ENST00000610245 2349 ntBASIC18.01■□□□□ 0.47
TRAIPQ9BWF2 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
TRAIPQ9BWF2 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
TRAIPQ9BWF2 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC18.01■□□□□ 0.47
TRAIPQ9BWF2 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
TRAIPQ9BWF2 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
TRAIPQ9BWF2 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
TRAIPQ9BWF2 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC18.01■□□□□ 0.47
TRAIPQ9BWF2 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC18.01■□□□□ 0.47
TRAIPQ9BWF2 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC18.01■□□□□ 0.47
TRAIPQ9BWF2 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC18.01■□□□□ 0.47
TRAIPQ9BWF2 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC18.01■□□□□ 0.47
TRAIPQ9BWF2 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC18.01■□□□□ 0.47
TRAIPQ9BWF2 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
TRAIPQ9BWF2 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
TRAIPQ9BWF2 KLK8-202ENST00000320838 456 ntTSL 5 BASIC18.01■□□□□ 0.47
TRAIPQ9BWF2 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC18.01■□□□□ 0.47
TRAIPQ9BWF2 FAM220BP-201ENST00000377689 816 ntBASIC18.01■□□□□ 0.47
TRAIPQ9BWF2 AL035633.1-201ENST00000406139 838 ntBASIC18.01■□□□□ 0.47
TRAIPQ9BWF2 TREML5P-201ENST00000421694 576 ntBASIC18.01■□□□□ 0.47
TRAIPQ9BWF2 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC18.01■□□□□ 0.47
TRAIPQ9BWF2 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC18.01■□□□□ 0.47
TRAIPQ9BWF2 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC18.01■□□□□ 0.47
TRAIPQ9BWF2 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC18.01■□□□□ 0.47
TRAIPQ9BWF2 NAA60-208ENST00000570819 833 ntTSL 2 BASIC18.01■□□□□ 0.47
TRAIPQ9BWF2 MIR4453-201ENST00000584019 89 ntBASIC18.01■□□□□ 0.47
TRAIPQ9BWF2 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC18.01■□□□□ 0.47
TRAIPQ9BWF2 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC18.01■□□□□ 0.47
TRAIPQ9BWF2 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC18.01■□□□□ 0.47
TRAIPQ9BWF2 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC18.01■□□□□ 0.47
TRAIPQ9BWF2 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
TRAIPQ9BWF2 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
TRAIPQ9BWF2 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
TRAIPQ9BWF2 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC18.01■□□□□ 0.47
TRAIPQ9BWF2 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
TRAIPQ9BWF2 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC18.01■□□□□ 0.47
TRAIPQ9BWF2 FAM208B-201ENST00000328090 8626 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
TRAIPQ9BWF2 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
TRAIPQ9BWF2 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
TRAIPQ9BWF2 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC18■□□□□ 0.47
TRAIPQ9BWF2 CACNA1G-206ENST00000416767 4899 ntTSL 1 (best) BASIC18■□□□□ 0.47
TRAIPQ9BWF2 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC18■□□□□ 0.47
TRAIPQ9BWF2 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC18■□□□□ 0.47
TRAIPQ9BWF2 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
TRAIPQ9BWF2 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC18■□□□□ 0.47
TRAIPQ9BWF2 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC18■□□□□ 0.47
TRAIPQ9BWF2 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC18■□□□□ 0.47
TRAIPQ9BWF2 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC18■□□□□ 0.47
TRAIPQ9BWF2 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
TRAIPQ9BWF2 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
TRAIPQ9BWF2 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
TRAIPQ9BWF2 AC073439.1-201ENST00000624121 1774 ntBASIC18■□□□□ 0.47
TRAIPQ9BWF2 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
TRAIPQ9BWF2 PCDHB19P-201ENST00000570871 2371 ntBASIC18■□□□□ 0.47
TRAIPQ9BWF2 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC18■□□□□ 0.47
TRAIPQ9BWF2 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
TRAIPQ9BWF2 CENPM-205ENST00000404067 905 ntTSL 3 BASIC18■□□□□ 0.47
TRAIPQ9BWF2 AC092580.3-201ENST00000430932 139 ntBASIC18■□□□□ 0.47
TRAIPQ9BWF2 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC18■□□□□ 0.47
TRAIPQ9BWF2 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC18■□□□□ 0.47
TRAIPQ9BWF2 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC18■□□□□ 0.47
TRAIPQ9BWF2 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC18■□□□□ 0.47
TRAIPQ9BWF2 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC18■□□□□ 0.47
TRAIPQ9BWF2 RPS15-212ENST00000593052 629 ntTSL 2 BASIC18■□□□□ 0.47
TRAIPQ9BWF2 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC18■□□□□ 0.47
TRAIPQ9BWF2 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC18■□□□□ 0.47
TRAIPQ9BWF2 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
TRAIPQ9BWF2 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC18■□□□□ 0.47
TRAIPQ9BWF2 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
TRAIPQ9BWF2 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
TRAIPQ9BWF2 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
TRAIPQ9BWF2 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC18■□□□□ 0.47
TRAIPQ9BWF2 AC092068.3-201ENST00000587894 2016 ntBASIC17.99■□□□□ 0.47
TRAIPQ9BWF2 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC17.99■□□□□ 0.47
TRAIPQ9BWF2 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
TRAIPQ9BWF2 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
TRAIPQ9BWF2 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
TRAIPQ9BWF2 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
TRAIPQ9BWF2 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
TRAIPQ9BWF2 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
TRAIPQ9BWF2 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 56.4 ms