Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC16■□□□□ 0.15
VPS13AQ96RL7 TAGLN3-202ENST00000393917 1488 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
VPS13AQ96RL7 CSNK2B-201ENST00000375865 908 ntAPPRIS P1 TSL 3 BASIC16■□□□□ 0.15
VPS13AQ96RL7 EVA1A-204ENST00000410071 777 ntAPPRIS P2 TSL 3 BASIC16■□□□□ 0.15
VPS13AQ96RL7 Z93015.1-201ENST00000451718 390 ntBASIC16■□□□□ 0.15
VPS13AQ96RL7 AL591846.1-201ENST00000451736 433 ntBASIC16■□□□□ 0.15
VPS13AQ96RL7 SIRT2-219ENST00000613542 1170 ntTSL 5 BASIC16■□□□□ 0.15
VPS13AQ96RL7 AC005702.4-201ENST00000618393 416 ntBASIC16■□□□□ 0.15
VPS13AQ96RL7 AL021997.3-201ENST00000621053 557 ntAPPRIS P1 TSL 4 BASIC16■□□□□ 0.15
VPS13AQ96RL7 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC16■□□□□ 0.15
VPS13AQ96RL7 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
VPS13AQ96RL7 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
VPS13AQ96RL7 AC018735.1-201ENST00000437208 1502 ntBASIC16■□□□□ 0.15
VPS13AQ96RL7 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC16■□□□□ 0.15
VPS13AQ96RL7 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
VPS13AQ96RL7 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
VPS13AQ96RL7 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC16■□□□□ 0.15
VPS13AQ96RL7 ZNRD1ASP-217ENST00000437417 1497 ntTSL 1 (best) BASIC16■□□□□ 0.15
VPS13AQ96RL7 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC16■□□□□ 0.15
VPS13AQ96RL7 FAM169B-201ENST00000332908 579 ntAPPRIS P1 TSL 5 BASIC15.99■□□□□ 0.15
VPS13AQ96RL7 IP6K2-202ENST00000340879 1185 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
VPS13AQ96RL7 HIST3H2BA-201ENST00000436555 524 ntBASIC15.99■□□□□ 0.15
VPS13AQ96RL7 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC15.99■□□□□ 0.15
VPS13AQ96RL7 AC136475.2-201ENST00000526612 392 ntTSL 3 BASIC15.99■□□□□ 0.15
VPS13AQ96RL7 SIGLEC29P-201ENST00000599873 1114 ntBASIC15.99■□□□□ 0.15
VPS13AQ96RL7 IFITM3-204ENST00000602735 713 ntAPPRIS ALT1 TSL 5 BASIC15.99■□□□□ 0.15
VPS13AQ96RL7 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
VPS13AQ96RL7 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
VPS13AQ96RL7 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
VPS13AQ96RL7 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC15.99■□□□□ 0.15
VPS13AQ96RL7 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC15.99■□□□□ 0.15
VPS13AQ96RL7 KRT8P37-201ENST00000451609 1420 ntBASIC15.99■□□□□ 0.15
VPS13AQ96RL7 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
VPS13AQ96RL7 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
VPS13AQ96RL7 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC15.99■□□□□ 0.15
VPS13AQ96RL7 FTLP1-201ENST00000449155 526 ntBASIC15.99■□□□□ 0.15
VPS13AQ96RL7 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC15.99■□□□□ 0.15
VPS13AQ96RL7 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
VPS13AQ96RL7 ENPP7P5-201ENST00000541031 1031 ntBASIC15.99■□□□□ 0.15
VPS13AQ96RL7 MIR6069-201ENST00000620069 79 ntBASIC15.99■□□□□ 0.15
VPS13AQ96RL7 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC15.99■□□□□ 0.15
VPS13AQ96RL7 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
VPS13AQ96RL7 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
VPS13AQ96RL7 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC15.99■□□□□ 0.15
VPS13AQ96RL7 AL021920.2-201ENST00000624828 1351 ntBASIC15.99■□□□□ 0.15
VPS13AQ96RL7 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC15.99■□□□□ 0.15
VPS13AQ96RL7 AC090164.3-201ENST00000610780 2143 ntBASIC15.99■□□□□ 0.15
VPS13AQ96RL7 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
VPS13AQ96RL7 SH3GLB2-205ENST00000416629 1415 ntTSL 5 BASIC15.99■□□□□ 0.15
VPS13AQ96RL7 ABALON-201ENST00000629058 1903 ntBASIC15.99■□□□□ 0.15
VPS13AQ96RL7 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC15.99■□□□□ 0.15
VPS13AQ96RL7 SLC25A1P3-201ENST00000395415 828 ntBASIC15.99■□□□□ 0.15
VPS13AQ96RL7 C17orf50-202ENST00000604830 477 ntTSL 3 BASIC15.99■□□□□ 0.15
VPS13AQ96RL7 COPS9-205ENST00000607357 418 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
VPS13AQ96RL7 FDPS-221ENST00000612683 1198 ntAPPRIS ALT1 TSL 5 BASIC15.99■□□□□ 0.15
VPS13AQ96RL7 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
VPS13AQ96RL7 LINC02199-201ENST00000506655 2702 ntBASIC15.99■□□□□ 0.15
VPS13AQ96RL7 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
VPS13AQ96RL7 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC15.99■□□□□ 0.15
VPS13AQ96RL7 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC15.98■□□□□ 0.15
VPS13AQ96RL7 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
VPS13AQ96RL7 AL645728.1-201ENST00000366221 2101 ntBASIC15.98■□□□□ 0.15
VPS13AQ96RL7 TRMO-203ENST00000375119 1647 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
VPS13AQ96RL7 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC15.98■□□□□ 0.15
VPS13AQ96RL7 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC15.98■□□□□ 0.15
VPS13AQ96RL7 RAB1A-201ENST00000398529 1198 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
VPS13AQ96RL7 TREML1-202ENST00000426005 981 ntAPPRIS P3 TSL 1 (best) BASIC15.98■□□□□ 0.15
VPS13AQ96RL7 FNTAP2-201ENST00000430308 634 ntBASIC15.98■□□□□ 0.15
VPS13AQ96RL7 ADM-202ENST00000524948 584 ntTSL 2 BASIC15.98■□□□□ 0.15
VPS13AQ96RL7 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC15.98■□□□□ 0.15
VPS13AQ96RL7 AC020914.3-201ENST00000594712 304 ntBASIC15.98■□□□□ 0.15
VPS13AQ96RL7 FHL2-212ENST00000607522 759 ntTSL 2 BASIC15.98■□□□□ 0.15
VPS13AQ96RL7 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC15.98■□□□□ 0.15
VPS13AQ96RL7 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
VPS13AQ96RL7 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC15.98■□□□□ 0.15
VPS13AQ96RL7 GGT4P-201ENST00000623672 1708 ntBASIC15.98■□□□□ 0.15
VPS13AQ96RL7 SNX33P1-201ENST00000592116 1762 ntBASIC15.98■□□□□ 0.15
VPS13AQ96RL7 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
VPS13AQ96RL7 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC15.98■□□□□ 0.15
VPS13AQ96RL7 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC15.98■□□□□ 0.15
VPS13AQ96RL7 EIF3G-201ENST00000253108 1103 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
VPS13AQ96RL7 NKAIN1P1-201ENST00000435754 582 ntBASIC15.98■□□□□ 0.15
VPS13AQ96RL7 AL157392.3-216ENST00000437446 462 ntTSL 3 BASIC15.98■□□□□ 0.15
VPS13AQ96RL7 AC008750.2-202ENST00000532688 729 ntTSL 3 BASIC15.98■□□□□ 0.15
VPS13AQ96RL7 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC15.98■□□□□ 0.15
VPS13AQ96RL7 YIF1B-216ENST00000592694 1181 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
VPS13AQ96RL7 C20orf141-202ENST00000603872 580 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
VPS13AQ96RL7 LINC00116-203ENST00000611969 441 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
VPS13AQ96RL7 CHST10-203ENST00000409701 1338 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
VPS13AQ96RL7 SNRPN-202ENST00000390687 1528 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
VPS13AQ96RL7 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
VPS13AQ96RL7 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
VPS13AQ96RL7 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC15.98■□□□□ 0.15
VPS13AQ96RL7 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
VPS13AQ96RL7 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
VPS13AQ96RL7 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
VPS13AQ96RL7 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
VPS13AQ96RL7 AC133963.1-201ENST00000504166 1679 ntBASIC15.97■□□□□ 0.15
VPS13AQ96RL7 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC15.97■□□□□ 0.15
VPS13AQ96RL7 AC090502.1-201ENST00000549905 748 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 42.7 ms