Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CHMP4CQ96CF2 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC19.65■□□□□ 0.74
CHMP4CQ96CF2 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC19.65■□□□□ 0.74
CHMP4CQ96CF2 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC19.65■□□□□ 0.74
CHMP4CQ96CF2 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC19.65■□□□□ 0.74
CHMP4CQ96CF2 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC19.65■□□□□ 0.74
CHMP4CQ96CF2 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC19.65■□□□□ 0.74
CHMP4CQ96CF2 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CHMP4CQ96CF2 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC19.65■□□□□ 0.74
CHMP4CQ96CF2 KIAA2026-202ENST00000399933 6988 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
CHMP4CQ96CF2 ME2P1-201ENST00000426028 1970 ntBASIC19.64■□□□□ 0.74
CHMP4CQ96CF2 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
CHMP4CQ96CF2 SH3BP4-203ENST00000409212 5231 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.74
CHMP4CQ96CF2 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
CHMP4CQ96CF2 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
CHMP4CQ96CF2 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
CHMP4CQ96CF2 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC19.64■□□□□ 0.73
CHMP4CQ96CF2 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CHMP4CQ96CF2 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
CHMP4CQ96CF2 AC004461.1-201ENST00000412461 403 ntBASIC19.64■□□□□ 0.73
CHMP4CQ96CF2 PMS2P2-201ENST00000425039 1128 ntBASIC19.64■□□□□ 0.73
CHMP4CQ96CF2 AL671277.1-201ENST00000429656 993 ntBASIC19.64■□□□□ 0.73
CHMP4CQ96CF2 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC19.64■□□□□ 0.73
CHMP4CQ96CF2 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC19.64■□□□□ 0.73
CHMP4CQ96CF2 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC19.64■□□□□ 0.73
CHMP4CQ96CF2 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC19.64■□□□□ 0.73
CHMP4CQ96CF2 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC19.64■□□□□ 0.73
CHMP4CQ96CF2 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
CHMP4CQ96CF2 AC027796.2-201ENST00000575326 344 ntBASIC19.64■□□□□ 0.73
CHMP4CQ96CF2 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
CHMP4CQ96CF2 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC19.64■□□□□ 0.73
CHMP4CQ96CF2 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC19.64■□□□□ 0.73
CHMP4CQ96CF2 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
CHMP4CQ96CF2 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CHMP4CQ96CF2 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC19.64■□□□□ 0.73
CHMP4CQ96CF2 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.73
CHMP4CQ96CF2 PCDHB19P-201ENST00000570871 2371 ntBASIC19.64■□□□□ 0.73
CHMP4CQ96CF2 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CHMP4CQ96CF2 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CHMP4CQ96CF2 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
CHMP4CQ96CF2 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
CHMP4CQ96CF2 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CHMP4CQ96CF2 SLIT1-204ENST00000371070 4564 ntTSL 5 BASIC19.64■□□□□ 0.73
CHMP4CQ96CF2 VANGL2-201ENST00000368061 5340 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
CHMP4CQ96CF2 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CHMP4CQ96CF2 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
CHMP4CQ96CF2 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CHMP4CQ96CF2 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
CHMP4CQ96CF2 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC19.63■□□□□ 0.73
CHMP4CQ96CF2 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
CHMP4CQ96CF2 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC19.63■□□□□ 0.73
CHMP4CQ96CF2 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
CHMP4CQ96CF2 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC19.63■□□□□ 0.73
CHMP4CQ96CF2 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
CHMP4CQ96CF2 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CHMP4CQ96CF2 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CHMP4CQ96CF2 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC19.63■□□□□ 0.73
CHMP4CQ96CF2 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CHMP4CQ96CF2 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CHMP4CQ96CF2 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CHMP4CQ96CF2 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CHMP4CQ96CF2 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC19.63■□□□□ 0.73
CHMP4CQ96CF2 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
CHMP4CQ96CF2 AC140658.5-201ENST00000438532 169 ntBASIC19.63■□□□□ 0.73
CHMP4CQ96CF2 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CHMP4CQ96CF2 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC19.63■□□□□ 0.73
CHMP4CQ96CF2 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC19.63■□□□□ 0.73
CHMP4CQ96CF2 AC112191.1-201ENST00000523689 701 ntBASIC19.63■□□□□ 0.73
CHMP4CQ96CF2 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC19.63■□□□□ 0.73
CHMP4CQ96CF2 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
CHMP4CQ96CF2 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
CHMP4CQ96CF2 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CHMP4CQ96CF2 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
CHMP4CQ96CF2 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC19.63■□□□□ 0.73
CHMP4CQ96CF2 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
CHMP4CQ96CF2 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
CHMP4CQ96CF2 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CHMP4CQ96CF2 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
CHMP4CQ96CF2 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CHMP4CQ96CF2 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
CHMP4CQ96CF2 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
CHMP4CQ96CF2 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC19.62■□□□□ 0.73
CHMP4CQ96CF2 ITSN1-209ENST00000399352 5408 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
CHMP4CQ96CF2 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CHMP4CQ96CF2 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CHMP4CQ96CF2 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CHMP4CQ96CF2 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
CHMP4CQ96CF2 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CHMP4CQ96CF2 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CHMP4CQ96CF2 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
CHMP4CQ96CF2 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
CHMP4CQ96CF2 STARD13-205ENST00000439831 945 ntTSL 2 BASIC19.62■□□□□ 0.73
CHMP4CQ96CF2 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
CHMP4CQ96CF2 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
CHMP4CQ96CF2 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC19.62■□□□□ 0.73
CHMP4CQ96CF2 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC19.62■□□□□ 0.73
CHMP4CQ96CF2 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
CHMP4CQ96CF2 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC19.62■□□□□ 0.73
CHMP4CQ96CF2 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC19.62■□□□□ 0.73
CHMP4CQ96CF2 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC19.62■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 40.2 ms