Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 KRT8P49-201ENST00000604166 1432 ntBASIC16.37■□□□□ 0.21
TTC28Q96AY4 NAGK-201ENST00000244204 1154 ntAPPRIS P5 TSL 1 (best) BASIC16.37■□□□□ 0.21
TTC28Q96AY4 MUC1-203ENST00000342482 537 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
TTC28Q96AY4 LINC00028-201ENST00000435497 587 ntTSL 2 BASIC16.37■□□□□ 0.21
TTC28Q96AY4 ITGA9-AS1-205ENST00000438136 578 ntTSL 4 BASIC16.37■□□□□ 0.21
TTC28Q96AY4 AC010234.1-201ENST00000494599 870 ntBASIC16.37■□□□□ 0.21
TTC28Q96AY4 HHIP-AS1-201ENST00000503066 897 ntTSL 5 BASIC16.37■□□□□ 0.21
TTC28Q96AY4 NEU3-205ENST00000531619 582 ntTSL 5 BASIC16.37■□□□□ 0.21
TTC28Q96AY4 LINC01672-205ENST00000635092 633 ntTSL 5 BASIC16.37■□□□□ 0.21
TTC28Q96AY4 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC16.37■□□□□ 0.21
TTC28Q96AY4 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
TTC28Q96AY4 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC16.36■□□□□ 0.21
TTC28Q96AY4 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
TTC28Q96AY4 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC16.36■□□□□ 0.21
TTC28Q96AY4 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
TTC28Q96AY4 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
TTC28Q96AY4 GNG5-201ENST00000370641 920 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
TTC28Q96AY4 LINC01433-201ENST00000419003 697 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
TTC28Q96AY4 CGB8-201ENST00000448456 882 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
TTC28Q96AY4 AC069208.1-205ENST00000456299 576 ntTSL 4 BASIC16.36■□□□□ 0.21
TTC28Q96AY4 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC16.36■□□□□ 0.21
TTC28Q96AY4 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC16.36■□□□□ 0.21
TTC28Q96AY4 ZNF124-206ENST00000543802 1292 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
TTC28Q96AY4 AC024267.1-201ENST00000582320 895 ntBASIC16.36■□□□□ 0.21
TTC28Q96AY4 GLUD1P2-203ENST00000631118 486 ntTSL 3 BASIC16.36■□□□□ 0.21
TTC28Q96AY4 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
TTC28Q96AY4 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC16.36■□□□□ 0.21
TTC28Q96AY4 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
TTC28Q96AY4 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC16.36■□□□□ 0.21
TTC28Q96AY4 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC16.36■□□□□ 0.21
TTC28Q96AY4 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC16.36■□□□□ 0.21
TTC28Q96AY4 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
TTC28Q96AY4 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
TTC28Q96AY4 ZDHHC4-201ENST00000335965 1259 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
TTC28Q96AY4 ACKR1-201ENST00000368121 1240 ntBASIC16.36■□□□□ 0.21
TTC28Q96AY4 APRT-201ENST00000378364 947 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
TTC28Q96AY4 LRRC74B-201ENST00000442047 1179 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
TTC28Q96AY4 AL163636.1-201ENST00000554286 915 ntTSL 5 BASIC16.36■□□□□ 0.21
TTC28Q96AY4 PLIN5-202ENST00000586133 907 ntTSL 3 BASIC16.36■□□□□ 0.21
TTC28Q96AY4 REXO1L8P-201ENST00000604378 1897 ntBASIC16.36■□□□□ 0.21
TTC28Q96AY4 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC16.36■□□□□ 0.21
TTC28Q96AY4 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
TTC28Q96AY4 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
TTC28Q96AY4 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC16.35■□□□□ 0.21
TTC28Q96AY4 PIGC-201ENST00000344529 1447 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
TTC28Q96AY4 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
TTC28Q96AY4 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
TTC28Q96AY4 SMS-201ENST00000379404 1174 ntTSL 3 BASIC16.35■□□□□ 0.21
TTC28Q96AY4 CSH2-203ENST00000392886 920 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
TTC28Q96AY4 AC079178.1-201ENST00000420915 656 ntBASIC16.35■□□□□ 0.21
TTC28Q96AY4 AC078991.1-201ENST00000437297 610 ntBASIC16.35■□□□□ 0.21
TTC28Q96AY4 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
TTC28Q96AY4 RPL18P13-201ENST00000478088 569 ntBASIC16.35■□□□□ 0.21
TTC28Q96AY4 ATP6V1G2-210ENST00000483251 662 ntTSL 3 BASIC16.35■□□□□ 0.21
TTC28Q96AY4 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC16.35■□□□□ 0.21
TTC28Q96AY4 CSH2-206ENST00000560142 749 ntTSL 5 BASIC16.35■□□□□ 0.21
TTC28Q96AY4 C1QTNF1-AS1-202ENST00000581579 865 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
TTC28Q96AY4 AC092634.5-202ENST00000587736 928 ntTSL 2 BASIC16.35■□□□□ 0.21
TTC28Q96AY4 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
TTC28Q96AY4 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
TTC28Q96AY4 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
TTC28Q96AY4 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
TTC28Q96AY4 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
TTC28Q96AY4 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
TTC28Q96AY4 SLC44A3-209ENST00000532427 1912 ntTSL 2 BASIC16.35■□□□□ 0.21
TTC28Q96AY4 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC16.35■□□□□ 0.21
TTC28Q96AY4 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
TTC28Q96AY4 DPM2-202ENST00000373110 738 ntTSL 2 BASIC16.35■□□□□ 0.21
TTC28Q96AY4 C17orf51-202ENST00000412778 877 ntAPPRIS ALT2 TSL 3 BASIC16.35■□□□□ 0.21
TTC28Q96AY4 AC125603.2-201ENST00000546835 876 ntTSL 3 BASIC16.35■□□□□ 0.21
TTC28Q96AY4 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
TTC28Q96AY4 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
TTC28Q96AY4 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC16.34■□□□□ 0.21
TTC28Q96AY4 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
TTC28Q96AY4 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
TTC28Q96AY4 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC16.34■□□□□ 0.21
TTC28Q96AY4 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC16.34■□□□□ 0.21
TTC28Q96AY4 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
TTC28Q96AY4 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
TTC28Q96AY4 CKMT2-201ENST00000254035 1512 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
TTC28Q96AY4 LINC00658-202ENST00000420529 1542 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
TTC28Q96AY4 TNFSF11-201ENST00000239849 911 ntTSL 5 BASIC16.34■□□□□ 0.21
TTC28Q96AY4 PDE6G-201ENST00000331056 1029 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
TTC28Q96AY4 FO393414.2-201ENST00000405153 598 ntBASIC16.34■□□□□ 0.21
TTC28Q96AY4 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC16.34■□□□□ 0.21
TTC28Q96AY4 AC010973.2-201ENST00000485974 1230 ntTSL 2 BASIC16.34■□□□□ 0.21
TTC28Q96AY4 ANAPC15-214ENST00000543587 883 ntAPPRIS ALT1 TSL 1 (best) BASIC16.34■□□□□ 0.21
TTC28Q96AY4 NIP7-208ENST00000569637 1099 ntTSL 2 BASIC16.34■□□□□ 0.21
TTC28Q96AY4 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC16.34■□□□□ 0.21
TTC28Q96AY4 AC093567.1-201ENST00000590649 877 ntTSL 3 BASIC16.34■□□□□ 0.21
TTC28Q96AY4 AC006064.4-201ENST00000602946 422 ntTSL 2 BASIC16.34■□□□□ 0.21
TTC28Q96AY4 LINC01669-205ENST00000624561 713 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
TTC28Q96AY4 LRWD1-209ENST00000626402 138 ntTSL 3 BASIC16.34■□□□□ 0.21
TTC28Q96AY4 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC16.34■□□□□ 0.21
TTC28Q96AY4 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
TTC28Q96AY4 FANCA-213ENST00000563673 1694 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
TTC28Q96AY4 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC16.34■□□□□ 0.21
TTC28Q96AY4 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC16.34■□□□□ 0.21
TTC28Q96AY4 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC16.34■□□□□ 0.21
TTC28Q96AY4 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 79.5 ms