Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 CD63-210ENST00000550776 870 ntTSL 5 BASIC5.12□□□□□ -1.59
SYNE1Q8NF91 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC5.12□□□□□ -1.59
SYNE1Q8NF91 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC5.12□□□□□ -1.59
SYNE1Q8NF91 AJ011932.1-201ENST00000621707 465 ntBASIC5.12□□□□□ -1.59
SYNE1Q8NF91 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
SYNE1Q8NF91 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
SYNE1Q8NF91 NF2-208ENST00000403435 2568 ntTSL 5 BASIC5.12□□□□□ -1.59
SYNE1Q8NF91 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC5.12□□□□□ -1.59
SYNE1Q8NF91 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
SYNE1Q8NF91 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
SYNE1Q8NF91 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC5.12□□□□□ -1.59
SYNE1Q8NF91 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC5.12□□□□□ -1.59
SYNE1Q8NF91 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
SYNE1Q8NF91 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
SYNE1Q8NF91 CD1B-201ENST00000368168 1395 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
SYNE1Q8NF91 SPOCK2-202ENST00000373109 5445 ntAPPRIS P2 TSL 1 (best) BASIC5.12□□□□□ -1.59
SYNE1Q8NF91 ATXN2L-205ENST00000395547 3981 ntAPPRIS P4 TSL 1 (best) BASIC5.12□□□□□ -1.59
SYNE1Q8NF91 EP400-203ENST00000333577 3092 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
SYNE1Q8NF91 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
SYNE1Q8NF91 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC5.12□□□□□ -1.59
SYNE1Q8NF91 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
SYNE1Q8NF91 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
SYNE1Q8NF91 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC5.12□□□□□ -1.59
SYNE1Q8NF91 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC5.12□□□□□ -1.59
SYNE1Q8NF91 BCAN-201ENST00000329117 3466 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
SYNE1Q8NF91 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
SYNE1Q8NF91 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
SYNE1Q8NF91 PELP1-208ENST00000572293 5272 ntAPPRIS P2 TSL 1 (best) BASIC5.12□□□□□ -1.59
SYNE1Q8NF91 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC5.12□□□□□ -1.59
SYNE1Q8NF91 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC5.12□□□□□ -1.59
SYNE1Q8NF91 TAOK3-201ENST00000392533 4384 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
SYNE1Q8NF91 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC5.12□□□□□ -1.59
SYNE1Q8NF91 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
SYNE1Q8NF91 WRB-204ENST00000398753 699 ntTSL 3 BASIC5.12□□□□□ -1.59
SYNE1Q8NF91 OARD1-208ENST00000469104 704 ntTSL 2 BASIC5.12□□□□□ -1.59
SYNE1Q8NF91 AC067863.1-201ENST00000494933 530 ntBASIC5.12□□□□□ -1.59
SYNE1Q8NF91 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC5.12□□□□□ -1.59
SYNE1Q8NF91 AC011467.4-201ENST00000594891 528 ntBASIC5.12□□□□□ -1.59
SYNE1Q8NF91 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC5.12□□□□□ -1.59
SYNE1Q8NF91 OARD1-216ENST00000628419 1188 ntTSL 5 BASIC5.12□□□□□ -1.59
SYNE1Q8NF91 RAB34-224ENST00000636513 888 ntTSL 5 BASIC5.12□□□□□ -1.59
SYNE1Q8NF91 RBFOX1-212ENST00000550418 4775 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
SYNE1Q8NF91 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC5.12□□□□□ -1.59
SYNE1Q8NF91 SMURF2-201ENST00000262435 2918 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
SYNE1Q8NF91 ENPP1-201ENST00000360971 7442 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
SYNE1Q8NF91 AC046185.3-201ENST00000623228 1824 ntBASIC5.12□□□□□ -1.59
SYNE1Q8NF91 GRIN1-204ENST00000371553 3751 ntAPPRIS P4 TSL 1 (best) BASIC5.12□□□□□ -1.59
SYNE1Q8NF91 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC5.12□□□□□ -1.59
SYNE1Q8NF91 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC5.12□□□□□ -1.59
SYNE1Q8NF91 KIF17-203ENST00000400463 3731 ntAPPRIS ALT2 TSL 1 (best) BASIC5.12□□□□□ -1.59
SYNE1Q8NF91 PDE8A-201ENST00000310298 3984 ntAPPRIS P4 TSL 1 (best) BASIC5.12□□□□□ -1.59
SYNE1Q8NF91 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC5.12□□□□□ -1.59
SYNE1Q8NF91 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
SYNE1Q8NF91 INGX-202ENST00000489074 768 ntBASIC5.12□□□□□ -1.59
SYNE1Q8NF91 AC093214.1-201ENST00000511688 1107 ntBASIC5.12□□□□□ -1.59
SYNE1Q8NF91 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC5.12□□□□□ -1.59
SYNE1Q8NF91 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
SYNE1Q8NF91 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC5.12□□□□□ -1.59
SYNE1Q8NF91 ITSN1-209ENST00000399352 5408 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
SYNE1Q8NF91 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC5.12□□□□□ -1.59
SYNE1Q8NF91 ELF4-201ENST00000308167 4165 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
SYNE1Q8NF91 BCKDHB-201ENST00000320393 3692 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
SYNE1Q8NF91 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC5.12□□□□□ -1.59
SYNE1Q8NF91 PSD2-201ENST00000274710 4513 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
SYNE1Q8NF91 SYBU-205ENST00000422135 3226 ntAPPRIS ALT2 TSL 5 BASIC5.12□□□□□ -1.59
SYNE1Q8NF91 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC5.12□□□□□ -1.59
SYNE1Q8NF91 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
SYNE1Q8NF91 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
SYNE1Q8NF91 PIP4K2A-206ENST00000545335 1436 ntTSL 2 BASIC5.12□□□□□ -1.59
SYNE1Q8NF91 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
SYNE1Q8NF91 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
SYNE1Q8NF91 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
SYNE1Q8NF91 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC5.12□□□□□ -1.59
SYNE1Q8NF91 KDM3A-201ENST00000312912 4886 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
SYNE1Q8NF91 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
SYNE1Q8NF91 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
SYNE1Q8NF91 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC5.12□□□□□ -1.59
SYNE1Q8NF91 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC5.12□□□□□ -1.59
SYNE1Q8NF91 AL139327.4-201ENST00000612362 153 ntBASIC5.12□□□□□ -1.59
SYNE1Q8NF91 AIFM2-201ENST00000307864 3243 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
SYNE1Q8NF91 AIFM2-204ENST00000613322 3247 ntAPPRIS P1 TSL 5 BASIC5.12□□□□□ -1.59
SYNE1Q8NF91 CBLN4-201ENST00000064571 3024 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
SYNE1Q8NF91 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC5.12□□□□□ -1.59
SYNE1Q8NF91 VAV2-201ENST00000371850 4837 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
SYNE1Q8NF91 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
SYNE1Q8NF91 LARGE1-201ENST00000354992 4409 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
SYNE1Q8NF91 AC134043.2-201ENST00000624206 2238 ntBASIC5.12□□□□□ -1.59
SYNE1Q8NF91 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
SYNE1Q8NF91 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC5.12□□□□□ -1.59
SYNE1Q8NF91 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC5.12□□□□□ -1.59
SYNE1Q8NF91 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
SYNE1Q8NF91 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC5.12□□□□□ -1.59
SYNE1Q8NF91 VHLL-201ENST00000339922 676 ntAPPRIS P1 BASIC5.12□□□□□ -1.59
SYNE1Q8NF91 METTL26-205ENST00000397666 726 ntTSL 2 BASIC5.12□□□□□ -1.59
SYNE1Q8NF91 AC142381.1-201ENST00000426099 345 ntBASIC5.12□□□□□ -1.59
SYNE1Q8NF91 AL671277.1-201ENST00000429656 993 ntBASIC5.12□□□□□ -1.59
SYNE1Q8NF91 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC5.12□□□□□ -1.59
SYNE1Q8NF91 AC244107.1-201ENST00000442033 332 ntBASIC5.12□□□□□ -1.59
SYNE1Q8NF91 GAPDHP21-201ENST00000450301 1010 ntBASIC5.12□□□□□ -1.59
SYNE1Q8NF91 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC5.12□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 34.7 ms