Protein–RNA interactions for Protein: Q8N1M1

BEST3, Bestrophin-3, humanhuman

Predictions only

Length 668 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3Q8N1M1 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
BEST3Q8N1M1 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
BEST3Q8N1M1 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC15.31■□□□□ 0.04
BEST3Q8N1M1 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
BEST3Q8N1M1 RB1CC1-201ENST00000025008 6635 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
BEST3Q8N1M1 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
BEST3Q8N1M1 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC15.31■□□□□ 0.04
BEST3Q8N1M1 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
BEST3Q8N1M1 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
BEST3Q8N1M1 PCDHB17P-201ENST00000539533 2393 ntBASIC15.31■□□□□ 0.04
BEST3Q8N1M1 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
BEST3Q8N1M1 DIDO1-201ENST00000266070 8574 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
BEST3Q8N1M1 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
BEST3Q8N1M1 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
BEST3Q8N1M1 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
BEST3Q8N1M1 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC15.31■□□□□ 0.04
BEST3Q8N1M1 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC15.31■□□□□ 0.04
BEST3Q8N1M1 SPDYE14P-201ENST00000442619 822 ntBASIC15.31■□□□□ 0.04
BEST3Q8N1M1 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
BEST3Q8N1M1 KRT18P34-201ENST00000488218 1270 ntBASIC15.31■□□□□ 0.04
BEST3Q8N1M1 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC15.31■□□□□ 0.04
BEST3Q8N1M1 AC069262.1-201ENST00000539058 672 ntBASIC15.31■□□□□ 0.04
BEST3Q8N1M1 AL512356.2-201ENST00000546955 174 ntBASIC15.31■□□□□ 0.04
BEST3Q8N1M1 DUX4L27-201ENST00000554796 1261 ntBASIC15.31■□□□□ 0.04
BEST3Q8N1M1 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
BEST3Q8N1M1 RAB34-224ENST00000636513 888 ntTSL 5 BASIC15.31■□□□□ 0.04
BEST3Q8N1M1 AC084121.4-201ENST00000641598 221 ntBASIC15.31■□□□□ 0.04
BEST3Q8N1M1 AF228730.8-201ENST00000642140 221 ntBASIC15.31■□□□□ 0.04
BEST3Q8N1M1 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
BEST3Q8N1M1 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
BEST3Q8N1M1 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC15.31■□□□□ 0.04
BEST3Q8N1M1 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
BEST3Q8N1M1 PCDH10-201ENST00000264360 8489 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
BEST3Q8N1M1 ADAMTS1-201ENST00000284984 5191 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
BEST3Q8N1M1 MFSD4B-201ENST00000368847 5958 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
BEST3Q8N1M1 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
BEST3Q8N1M1 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC15.31■□□□□ 0.04
BEST3Q8N1M1 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
BEST3Q8N1M1 AL671710.1-201ENST00000610245 2349 ntBASIC15.31■□□□□ 0.04
BEST3Q8N1M1 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
BEST3Q8N1M1 CPEB2-204ENST00000382401 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
BEST3Q8N1M1 EIF4G3-212ENST00000602326 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
BEST3Q8N1M1 STUM-201ENST00000366788 7705 ntAPPRIS P2 TSL 5 BASIC15.3■□□□□ 0.04
BEST3Q8N1M1 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
BEST3Q8N1M1 NRXN1-204ENST00000401669 5870 ntAPPRIS ALT1 TSL 5 BASIC15.3■□□□□ 0.04
BEST3Q8N1M1 MSI2-201ENST00000284073 6364 ntAPPRIS P4 TSL 1 (best) BASIC15.3■□□□□ 0.04
BEST3Q8N1M1 FEM1C-201ENST00000274457 5816 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
BEST3Q8N1M1 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
BEST3Q8N1M1 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
BEST3Q8N1M1 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
BEST3Q8N1M1 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
BEST3Q8N1M1 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC15.3■□□□□ 0.04
BEST3Q8N1M1 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC15.3■□□□□ 0.04
BEST3Q8N1M1 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
BEST3Q8N1M1 ADARB2-203ENST00000381312 8421 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
BEST3Q8N1M1 TUBB3P1-201ENST00000405796 1332 ntBASIC15.3■□□□□ 0.04
BEST3Q8N1M1 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
BEST3Q8N1M1 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
BEST3Q8N1M1 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC15.3■□□□□ 0.04
BEST3Q8N1M1 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
BEST3Q8N1M1 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC15.3■□□□□ 0.04
BEST3Q8N1M1 LAT-209ENST00000564277 921 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
BEST3Q8N1M1 SSH2-211ENST00000590153 570 ntTSL 4 BASIC15.3■□□□□ 0.04
BEST3Q8N1M1 UBALD1-205ENST00000590891 2641 ntBASIC15.3■□□□□ 0.04
BEST3Q8N1M1 AC005498.2-205ENST00000593218 784 ntBASIC15.3■□□□□ 0.04
BEST3Q8N1M1 AC013467.2-201ENST00000605472 835 ntBASIC15.3■□□□□ 0.04
BEST3Q8N1M1 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
BEST3Q8N1M1 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC15.3■□□□□ 0.04
BEST3Q8N1M1 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
BEST3Q8N1M1 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC15.3■□□□□ 0.04
BEST3Q8N1M1 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
BEST3Q8N1M1 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
BEST3Q8N1M1 CICP6-201ENST00000457191 2729 ntBASIC15.3■□□□□ 0.04
BEST3Q8N1M1 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
BEST3Q8N1M1 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC15.29■□□□□ 0.04
BEST3Q8N1M1 BRD3-201ENST00000303407 5652 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
BEST3Q8N1M1 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
BEST3Q8N1M1 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC15.29■□□□□ 0.04
BEST3Q8N1M1 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
BEST3Q8N1M1 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
BEST3Q8N1M1 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
BEST3Q8N1M1 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC15.29■□□□□ 0.04
BEST3Q8N1M1 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC15.29■□□□□ 0.04
BEST3Q8N1M1 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
BEST3Q8N1M1 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
BEST3Q8N1M1 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
BEST3Q8N1M1 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
BEST3Q8N1M1 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC15.29■□□□□ 0.04
BEST3Q8N1M1 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
BEST3Q8N1M1 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
BEST3Q8N1M1 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
BEST3Q8N1M1 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
BEST3Q8N1M1 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
BEST3Q8N1M1 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC15.29■□□□□ 0.04
BEST3Q8N1M1 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
BEST3Q8N1M1 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC15.29■□□□□ 0.04
BEST3Q8N1M1 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC15.29■□□□□ 0.04
BEST3Q8N1M1 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
BEST3Q8N1M1 ALG1L8P-201ENST00000533887 760 ntBASIC15.29■□□□□ 0.04
BEST3Q8N1M1 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 41.4 ms