Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC17.45■□□□□ 0.38
USP41Q3LFD5 SPSB2-204ENST00000523102 1205 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
USP41Q3LFD5 SPSB2-205ENST00000524270 1236 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
USP41Q3LFD5 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC17.45■□□□□ 0.38
USP41Q3LFD5 COQ9-214ENST00000567933 882 ntTSL 3 BASIC17.45■□□□□ 0.38
USP41Q3LFD5 PRR29-204ENST00000577953 565 ntTSL 4 BASIC17.45■□□□□ 0.38
USP41Q3LFD5 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
USP41Q3LFD5 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC17.45■□□□□ 0.38
USP41Q3LFD5 AL844908.2-201ENST00000609461 460 ntBASIC17.45■□□□□ 0.38
USP41Q3LFD5 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
USP41Q3LFD5 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
USP41Q3LFD5 AL589702.1-201ENST00000641229 1509 ntBASIC17.45■□□□□ 0.38
USP41Q3LFD5 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
USP41Q3LFD5 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
USP41Q3LFD5 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC17.45■□□□□ 0.38
USP41Q3LFD5 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC17.45■□□□□ 0.38
USP41Q3LFD5 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
USP41Q3LFD5 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
USP41Q3LFD5 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC17.45■□□□□ 0.38
USP41Q3LFD5 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
USP41Q3LFD5 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC17.45■□□□□ 0.38
USP41Q3LFD5 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
USP41Q3LFD5 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC17.45■□□□□ 0.38
USP41Q3LFD5 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
USP41Q3LFD5 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
USP41Q3LFD5 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
USP41Q3LFD5 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC17.44■□□□□ 0.38
USP41Q3LFD5 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
USP41Q3LFD5 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
USP41Q3LFD5 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
USP41Q3LFD5 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC17.44■□□□□ 0.38
USP41Q3LFD5 AIP-201ENST00000279146 1221 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
USP41Q3LFD5 TSPO-202ENST00000337554 881 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
USP41Q3LFD5 CALY-202ENST00000368555 783 ntTSL 2 BASIC17.44■□□□□ 0.38
USP41Q3LFD5 PKIG-202ENST00000372886 1180 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
USP41Q3LFD5 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC17.44■□□□□ 0.38
USP41Q3LFD5 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC17.44■□□□□ 0.38
USP41Q3LFD5 CENPM-206ENST00000407253 818 ntTSL 2 BASIC17.44■□□□□ 0.38
USP41Q3LFD5 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC17.44■□□□□ 0.38
USP41Q3LFD5 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC17.44■□□□□ 0.38
USP41Q3LFD5 CCDC74BP1-201ENST00000508880 1123 ntBASIC17.44■□□□□ 0.38
USP41Q3LFD5 STOM-203ENST00000538954 1257 ntTSL 5 BASIC17.44■□□□□ 0.38
USP41Q3LFD5 AC026471.2-201ENST00000569782 655 ntTSL 2 BASIC17.44■□□□□ 0.38
USP41Q3LFD5 SSH2-210ENST00000582084 560 ntTSL 3 BASIC17.44■□□□□ 0.38
USP41Q3LFD5 AC025048.6-201ENST00000634326 1161 ntBASIC17.44■□□□□ 0.38
USP41Q3LFD5 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
USP41Q3LFD5 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
USP41Q3LFD5 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
USP41Q3LFD5 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
USP41Q3LFD5 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
USP41Q3LFD5 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC17.44■□□□□ 0.38
USP41Q3LFD5 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC17.44■□□□□ 0.38
USP41Q3LFD5 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
USP41Q3LFD5 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC17.44■□□□□ 0.38
USP41Q3LFD5 CLN8-205ENST00000520991 1305 ntTSL 5 BASIC17.44■□□□□ 0.38
USP41Q3LFD5 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
USP41Q3LFD5 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC17.44■□□□□ 0.38
USP41Q3LFD5 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
USP41Q3LFD5 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
USP41Q3LFD5 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC17.44■□□□□ 0.38
USP41Q3LFD5 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
USP41Q3LFD5 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC17.44■□□□□ 0.38
USP41Q3LFD5 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC17.43■□□□□ 0.38
USP41Q3LFD5 NF2-208ENST00000403435 2568 ntTSL 5 BASIC17.43■□□□□ 0.38
USP41Q3LFD5 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC17.43■□□□□ 0.38
USP41Q3LFD5 NKILA-202ENST00000614771 2598 ntBASIC17.43■□□□□ 0.38
USP41Q3LFD5 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
USP41Q3LFD5 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
USP41Q3LFD5 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
USP41Q3LFD5 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC17.43■□□□□ 0.38
USP41Q3LFD5 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
USP41Q3LFD5 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
USP41Q3LFD5 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC17.43■□□□□ 0.38
USP41Q3LFD5 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
USP41Q3LFD5 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
USP41Q3LFD5 AL031731.1-201ENST00000642131 2094 ntBASIC17.43■□□□□ 0.38
USP41Q3LFD5 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
USP41Q3LFD5 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC17.43■□□□□ 0.38
USP41Q3LFD5 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
USP41Q3LFD5 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC17.43■□□□□ 0.38
USP41Q3LFD5 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
USP41Q3LFD5 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
USP41Q3LFD5 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
USP41Q3LFD5 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
USP41Q3LFD5 MORN4-202ENST00000370635 419 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
USP41Q3LFD5 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
USP41Q3LFD5 RBM39-205ENST00000397370 612 ntTSL 2 BASIC17.43■□□□□ 0.38
USP41Q3LFD5 AL080243.2-201ENST00000418783 582 ntBASIC17.43■□□□□ 0.38
USP41Q3LFD5 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC17.43■□□□□ 0.38
USP41Q3LFD5 TMEM176A-202ENST00000461345 635 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
USP41Q3LFD5 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
USP41Q3LFD5 NAA38-207ENST00000576861 556 ntTSL 3 BASIC17.43■□□□□ 0.38
USP41Q3LFD5 AC008738.7-201ENST00000609744 511 ntBASIC17.43■□□□□ 0.38
USP41Q3LFD5 DBI-211ENST00000627093 554 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
USP41Q3LFD5 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
USP41Q3LFD5 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC17.43■□□□□ 0.38
USP41Q3LFD5 AC060834.1-201ENST00000443027 2032 ntBASIC17.43■□□□□ 0.38
USP41Q3LFD5 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC17.43■□□□□ 0.38
USP41Q3LFD5 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC17.43■□□□□ 0.38
USP41Q3LFD5 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC17.43■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 48.4 ms