Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 RPS15-212ENST00000593052 629 ntTSL 2 BASIC16.12■□□□□ 0.17
PTCHD3Q3KNS1 AC068137.2-201ENST00000605408 478 ntBASIC16.12■□□□□ 0.17
PTCHD3Q3KNS1 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC16.12■□□□□ 0.17
PTCHD3Q3KNS1 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
PTCHD3Q3KNS1 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
PTCHD3Q3KNS1 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
PTCHD3Q3KNS1 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
PTCHD3Q3KNS1 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
PTCHD3Q3KNS1 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
PTCHD3Q3KNS1 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
PTCHD3Q3KNS1 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
PTCHD3Q3KNS1 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
PTCHD3Q3KNS1 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC16.12■□□□□ 0.17
PTCHD3Q3KNS1 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
PTCHD3Q3KNS1 PPP1R3G-201ENST00000405617 4907 ntAPPRIS P1 BASIC16.12■□□□□ 0.17
PTCHD3Q3KNS1 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PTCHD3Q3KNS1 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC16.11■□□□□ 0.17
PTCHD3Q3KNS1 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC16.11■□□□□ 0.17
PTCHD3Q3KNS1 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PTCHD3Q3KNS1 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
PTCHD3Q3KNS1 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
PTCHD3Q3KNS1 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC16.11■□□□□ 0.17
PTCHD3Q3KNS1 AP2A2-201ENST00000332231 4656 ntAPPRIS ALT1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PTCHD3Q3KNS1 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC16.11■□□□□ 0.17
PTCHD3Q3KNS1 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PTCHD3Q3KNS1 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC16.11■□□□□ 0.17
PTCHD3Q3KNS1 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
PTCHD3Q3KNS1 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
PTCHD3Q3KNS1 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
PTCHD3Q3KNS1 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PTCHD3Q3KNS1 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC16.11■□□□□ 0.17
PTCHD3Q3KNS1 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
PTCHD3Q3KNS1 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
PTCHD3Q3KNS1 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
PTCHD3Q3KNS1 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC16.11■□□□□ 0.17
PTCHD3Q3KNS1 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC16.11■□□□□ 0.17
PTCHD3Q3KNS1 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
PTCHD3Q3KNS1 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC16.11■□□□□ 0.17
PTCHD3Q3KNS1 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
PTCHD3Q3KNS1 AC021097.1-201ENST00000607902 574 ntBASIC16.11■□□□□ 0.17
PTCHD3Q3KNS1 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC16.11■□□□□ 0.17
PTCHD3Q3KNS1 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC16.11■□□□□ 0.17
PTCHD3Q3KNS1 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
PTCHD3Q3KNS1 AL162727.3-201ENST00000635661 2787 ntBASIC16.11■□□□□ 0.17
PTCHD3Q3KNS1 MTCL1-205ENST00000517570 6009 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
PTCHD3Q3KNS1 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
PTCHD3Q3KNS1 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
PTCHD3Q3KNS1 SOCS7-201ENST00000612932 7857 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PTCHD3Q3KNS1 STAT5A-201ENST00000345506 4301 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PTCHD3Q3KNS1 GAS7-203ENST00000432992 4970 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PTCHD3Q3KNS1 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PTCHD3Q3KNS1 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
PTCHD3Q3KNS1 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
PTCHD3Q3KNS1 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
PTCHD3Q3KNS1 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PTCHD3Q3KNS1 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
PTCHD3Q3KNS1 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PTCHD3Q3KNS1 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
PTCHD3Q3KNS1 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC16.11■□□□□ 0.17
PTCHD3Q3KNS1 LINC01144-201ENST00000626198 1710 ntBASIC16.11■□□□□ 0.17
PTCHD3Q3KNS1 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
PTCHD3Q3KNS1 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
PTCHD3Q3KNS1 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC16.1■□□□□ 0.17
PTCHD3Q3KNS1 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
PTCHD3Q3KNS1 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC16.1■□□□□ 0.17
PTCHD3Q3KNS1 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
PTCHD3Q3KNS1 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC16.1■□□□□ 0.17
PTCHD3Q3KNS1 NFATC4-202ENST00000413692 5700 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
PTCHD3Q3KNS1 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC16.1■□□□□ 0.17
PTCHD3Q3KNS1 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC16.1■□□□□ 0.17
PTCHD3Q3KNS1 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC16.1■□□□□ 0.17
PTCHD3Q3KNS1 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
PTCHD3Q3KNS1 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
PTCHD3Q3KNS1 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PTCHD3Q3KNS1 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
PTCHD3Q3KNS1 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
PTCHD3Q3KNS1 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC16.1■□□□□ 0.17
PTCHD3Q3KNS1 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
PTCHD3Q3KNS1 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
PTCHD3Q3KNS1 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
PTCHD3Q3KNS1 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
PTCHD3Q3KNS1 KIAA1147-202ENST00000536163 7296 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PTCHD3Q3KNS1 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PTCHD3Q3KNS1 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PTCHD3Q3KNS1 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
PTCHD3Q3KNS1 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PTCHD3Q3KNS1 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC16.1■□□□□ 0.17
PTCHD3Q3KNS1 NEK7-201ENST00000367383 586 ntTSL 2 BASIC16.1■□□□□ 0.17
PTCHD3Q3KNS1 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC16.1■□□□□ 0.17
PTCHD3Q3KNS1 CD99-202ENST00000381180 530 ntTSL 2 BASIC16.1■□□□□ 0.17
PTCHD3Q3KNS1 PMS2P4-201ENST00000412466 1052 ntBASIC16.1■□□□□ 0.17
PTCHD3Q3KNS1 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC16.1■□□□□ 0.17
PTCHD3Q3KNS1 FALEC-201ENST00000416894 566 ntTSL 3 BASIC16.1■□□□□ 0.17
PTCHD3Q3KNS1 PMS2P2-201ENST00000425039 1128 ntBASIC16.1■□□□□ 0.17
PTCHD3Q3KNS1 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC16.1■□□□□ 0.17
PTCHD3Q3KNS1 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC16.1■□□□□ 0.17
PTCHD3Q3KNS1 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC16.1■□□□□ 0.17
PTCHD3Q3KNS1 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC16.1■□□□□ 0.17
PTCHD3Q3KNS1 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC16.1■□□□□ 0.17
PTCHD3Q3KNS1 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC16.1■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms