Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
COL28A1Q2UY09 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC15.85■□□□□ 0.13
COL28A1Q2UY09 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC15.85■□□□□ 0.13
COL28A1Q2UY09 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC15.85■□□□□ 0.13
COL28A1Q2UY09 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC15.85■□□□□ 0.13
COL28A1Q2UY09 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC15.85■□□□□ 0.13
COL28A1Q2UY09 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC15.85■□□□□ 0.13
COL28A1Q2UY09 AL135999.2-201ENST00000622438 1686 ntBASIC15.85■□□□□ 0.13
COL28A1Q2UY09 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
COL28A1Q2UY09 BACE2-203ENST00000347667 8764 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
COL28A1Q2UY09 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
COL28A1Q2UY09 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC15.85■□□□□ 0.13
COL28A1Q2UY09 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC15.85■□□□□ 0.13
COL28A1Q2UY09 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
COL28A1Q2UY09 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC15.85■□□□□ 0.13
COL28A1Q2UY09 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
COL28A1Q2UY09 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC15.85■□□□□ 0.13
COL28A1Q2UY09 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC15.84■□□□□ 0.13
COL28A1Q2UY09 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC15.84■□□□□ 0.13
COL28A1Q2UY09 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC15.84■□□□□ 0.13
COL28A1Q2UY09 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC15.84■□□□□ 0.13
COL28A1Q2UY09 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
COL28A1Q2UY09 CYB561D2-202ENST00000418577 1533 ntAPPRIS P1 TSL 2 BASIC15.84■□□□□ 0.13
COL28A1Q2UY09 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.13
COL28A1Q2UY09 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC15.84■□□□□ 0.13
COL28A1Q2UY09 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC15.84■□□□□ 0.13
COL28A1Q2UY09 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC15.84■□□□□ 0.13
COL28A1Q2UY09 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC15.84■□□□□ 0.13
COL28A1Q2UY09 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC15.84■□□□□ 0.13
COL28A1Q2UY09 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC15.84■□□□□ 0.13
COL28A1Q2UY09 AL023806.1-201ENST00000603994 1649 ntBASIC15.84■□□□□ 0.13
COL28A1Q2UY09 BMP3-201ENST00000282701 5734 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
COL28A1Q2UY09 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC15.84■□□□□ 0.13
COL28A1Q2UY09 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC15.84■□□□□ 0.13
COL28A1Q2UY09 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
COL28A1Q2UY09 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
COL28A1Q2UY09 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
COL28A1Q2UY09 RPF1-202ENST00000370656 724 ntTSL 2 BASIC15.84■□□□□ 0.13
COL28A1Q2UY09 WDR38-201ENST00000373574 1252 ntAPPRIS P3 TSL 1 (best) BASIC15.84■□□□□ 0.13
COL28A1Q2UY09 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC15.84■□□□□ 0.13
COL28A1Q2UY09 MPV17-208ENST00000405076 603 ntTSL 5 BASIC15.84■□□□□ 0.13
COL28A1Q2UY09 LEPROTL1-202ENST00000442880 908 ntTSL 2 BASIC15.84■□□□□ 0.13
COL28A1Q2UY09 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
COL28A1Q2UY09 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC15.84■□□□□ 0.13
COL28A1Q2UY09 SPSB2-204ENST00000523102 1205 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
COL28A1Q2UY09 SPSB2-205ENST00000524270 1236 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
COL28A1Q2UY09 STOM-203ENST00000538954 1257 ntTSL 5 BASIC15.84■□□□□ 0.13
COL28A1Q2UY09 IL32-234ENST00000552936 713 ntAPPRIS ALT2 TSL 3 BASIC15.84■□□□□ 0.13
COL28A1Q2UY09 MIR4259-201ENST00000584466 101 ntBASIC15.84■□□□□ 0.13
COL28A1Q2UY09 SSH2-211ENST00000590153 570 ntTSL 4 BASIC15.84■□□□□ 0.13
COL28A1Q2UY09 SPDYE12P-201ENST00000618416 771 ntBASIC15.84■□□□□ 0.13
COL28A1Q2UY09 GPR182-203ENST00000622922 591 ntBASIC15.84■□□□□ 0.13
COL28A1Q2UY09 AL391650.2-201ENST00000640097 941 ntTSL 5 BASIC15.84■□□□□ 0.13
COL28A1Q2UY09 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC15.84■□□□□ 0.13
COL28A1Q2UY09 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC15.84■□□□□ 0.13
COL28A1Q2UY09 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC15.84■□□□□ 0.13
COL28A1Q2UY09 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
COL28A1Q2UY09 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
COL28A1Q2UY09 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
COL28A1Q2UY09 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC15.84■□□□□ 0.13
COL28A1Q2UY09 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC15.84■□□□□ 0.13
COL28A1Q2UY09 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC15.84■□□□□ 0.13
COL28A1Q2UY09 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
COL28A1Q2UY09 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC15.84■□□□□ 0.13
COL28A1Q2UY09 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC15.84■□□□□ 0.13
COL28A1Q2UY09 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC15.84■□□□□ 0.13
COL28A1Q2UY09 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC15.84■□□□□ 0.13
COL28A1Q2UY09 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC15.84■□□□□ 0.13
COL28A1Q2UY09 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC15.84■□□□□ 0.13
COL28A1Q2UY09 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC15.84■□□□□ 0.13
COL28A1Q2UY09 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC15.84■□□□□ 0.13
COL28A1Q2UY09 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC15.84■□□□□ 0.13
COL28A1Q2UY09 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
COL28A1Q2UY09 AL031282.2-201ENST00000598846 5079 ntTSL 2 BASIC15.84■□□□□ 0.13
COL28A1Q2UY09 CDC42BPG-201ENST00000342711 5742 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
COL28A1Q2UY09 DIDO1-207ENST00000395343 8477 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.13
COL28A1Q2UY09 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC15.83■□□□□ 0.13
COL28A1Q2UY09 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
COL28A1Q2UY09 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC15.83■□□□□ 0.13
COL28A1Q2UY09 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
COL28A1Q2UY09 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
COL28A1Q2UY09 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
COL28A1Q2UY09 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
COL28A1Q2UY09 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
COL28A1Q2UY09 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
COL28A1Q2UY09 LGALS2-201ENST00000215886 591 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
COL28A1Q2UY09 POLR2I-201ENST00000221859 913 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
COL28A1Q2UY09 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
COL28A1Q2UY09 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
COL28A1Q2UY09 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
COL28A1Q2UY09 FAM162A-202ENST00000469967 1015 ntTSL 2 BASIC15.83■□□□□ 0.12
COL28A1Q2UY09 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC15.83■□□□□ 0.12
COL28A1Q2UY09 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC15.83■□□□□ 0.12
COL28A1Q2UY09 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC15.83■□□□□ 0.12
COL28A1Q2UY09 MIR4538-201ENST00000581377 78 ntBASIC15.83■□□□□ 0.12
COL28A1Q2UY09 ZNF226-211ENST00000588742 447 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
COL28A1Q2UY09 BARD1-209ENST00000613192 703 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
COL28A1Q2UY09 SYNE2-228ENST00000639659 1290 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
COL28A1Q2UY09 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC15.83■□□□□ 0.12
COL28A1Q2UY09 HECTD1-201ENST00000399332 9134 ntAPPRIS P1 TSL 5 BASIC15.83■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 56.6 ms