Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC15.24■□□□□ 0.03
RNF4P78317 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC15.24■□□□□ 0.03
RNF4P78317 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC15.24■□□□□ 0.03
RNF4P78317 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
RNF4P78317 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
RNF4P78317 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
RNF4P78317 AL139400.1-201ENST00000366220 510 ntBASIC15.24■□□□□ 0.03
RNF4P78317 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
RNF4P78317 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
RNF4P78317 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
RNF4P78317 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC15.24■□□□□ 0.03
RNF4P78317 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC15.24■□□□□ 0.03
RNF4P78317 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC15.24■□□□□ 0.03
RNF4P78317 AC142381.1-201ENST00000426099 345 ntBASIC15.24■□□□□ 0.03
RNF4P78317 AC093724.1-201ENST00000448659 1027 ntBASIC15.24■□□□□ 0.03
RNF4P78317 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
RNF4P78317 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC15.24■□□□□ 0.03
RNF4P78317 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC15.24■□□□□ 0.03
RNF4P78317 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC15.24■□□□□ 0.03
RNF4P78317 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC15.24■□□□□ 0.03
RNF4P78317 LINC00628-201ENST00000628516 1289 ntBASIC15.24■□□□□ 0.03
RNF4P78317 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC15.24■□□□□ 0.03
RNF4P78317 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
RNF4P78317 ZNF324-203ENST00000536459 5653 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
RNF4P78317 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC15.24■□□□□ 0.03
RNF4P78317 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
RNF4P78317 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
RNF4P78317 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC15.24■□□□□ 0.03
RNF4P78317 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
RNF4P78317 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC15.24■□□□□ 0.03
RNF4P78317 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
RNF4P78317 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC15.24■□□□□ 0.03
RNF4P78317 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC15.24■□□□□ 0.03
RNF4P78317 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
RNF4P78317 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
RNF4P78317 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
RNF4P78317 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
RNF4P78317 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
RNF4P78317 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
RNF4P78317 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
RNF4P78317 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC15.23■□□□□ 0.03
RNF4P78317 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
RNF4P78317 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
RNF4P78317 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
RNF4P78317 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
RNF4P78317 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
RNF4P78317 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
RNF4P78317 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC15.23■□□□□ 0.03
RNF4P78317 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
RNF4P78317 PP14571-201ENST00000404327 934 ntTSL 2 BASIC15.23■□□□□ 0.03
RNF4P78317 GGCT-205ENST00000409436 954 ntTSL 3 BASIC15.23■□□□□ 0.03
RNF4P78317 GPS2P2-201ENST00000430745 888 ntBASIC15.23■□□□□ 0.03
RNF4P78317 RBPMS2P1-201ENST00000437762 623 ntBASIC15.23■□□□□ 0.03
RNF4P78317 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
RNF4P78317 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
RNF4P78317 AC004449.1-201ENST00000564240 433 ntBASIC15.23■□□□□ 0.03
RNF4P78317 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC15.23■□□□□ 0.03
RNF4P78317 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC15.23■□□□□ 0.03
RNF4P78317 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC15.23■□□□□ 0.03
RNF4P78317 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC15.23■□□□□ 0.03
RNF4P78317 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC15.23■□□□□ 0.03
RNF4P78317 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
RNF4P78317 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
RNF4P78317 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC15.23■□□□□ 0.03
RNF4P78317 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC15.23■□□□□ 0.03
RNF4P78317 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
RNF4P78317 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
RNF4P78317 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC15.23■□□□□ 0.03
RNF4P78317 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
RNF4P78317 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC15.23■□□□□ 0.03
RNF4P78317 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
RNF4P78317 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
RNF4P78317 NRG1-202ENST00000356819 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
RNF4P78317 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
RNF4P78317 ANTXR1-201ENST00000303714 5859 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
RNF4P78317 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
RNF4P78317 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
RNF4P78317 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
RNF4P78317 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
RNF4P78317 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
RNF4P78317 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
RNF4P78317 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC15.22■□□□□ 0.03
RNF4P78317 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
RNF4P78317 RPL30-202ENST00000396070 440 ntTSL 2 BASIC15.22■□□□□ 0.03
RNF4P78317 PMS2P2-201ENST00000425039 1128 ntBASIC15.22■□□□□ 0.03
RNF4P78317 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC15.22■□□□□ 0.03
RNF4P78317 AC109322.1-201ENST00000524499 1264 ntBASIC15.22■□□□□ 0.03
RNF4P78317 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
RNF4P78317 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC15.22■□□□□ 0.03
RNF4P78317 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC15.22■□□□□ 0.03
RNF4P78317 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC15.22■□□□□ 0.03
RNF4P78317 FHL2-212ENST00000607522 759 ntTSL 2 BASIC15.22■□□□□ 0.03
RNF4P78317 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC15.22■□□□□ 0.03
RNF4P78317 SPTSSB-204ENST00000617024 1292 ntBASIC15.22■□□□□ 0.03
RNF4P78317 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC15.22■□□□□ 0.03
RNF4P78317 FBXO46-201ENST00000317683 3001 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
RNF4P78317 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
RNF4P78317 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC15.22■□□□□ 0.03
RNF4P78317 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
RNF4P78317 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 49.6 ms