Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
FOXA3P55318 POM121-202ENST00000395270 7011 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.42
FOXA3P55318 YTHDC1-202ENST00000355665 3244 ntAPPRIS P3 TSL 1 (best) BASIC12.44□□□□□ -0.42
FOXA3P55318 CYB561-219ENST00000584031 3200 ntTSL 2 BASIC12.44□□□□□ -0.42
FOXA3P55318 PKD2L2-205ENST00000508638 2333 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
FOXA3P55318 SLC8B1-201ENST00000202831 2975 ntAPPRIS P1 TSL 5 BASIC12.44□□□□□ -0.42
FOXA3P55318 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.42
FOXA3P55318 WARS-232ENST00000556645 2508 ntTSL 5 BASIC12.44□□□□□ -0.42
FOXA3P55318 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
FOXA3P55318 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
FOXA3P55318 GALNTL6-205ENST00000511251 2905 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
FOXA3P55318 AC004805.1-201ENST00000577662 1616 ntAPPRIS P1 TSL 2 BASIC12.44□□□□□ -0.42
FOXA3P55318 CAMK2D-205ENST00000394524 5294 ntAPPRIS ALT1 TSL 2 BASIC12.44□□□□□ -0.42
FOXA3P55318 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
FOXA3P55318 NRBP1-201ENST00000233557 2887 ntAPPRIS P1 TSL 2 BASIC12.44□□□□□ -0.42
FOXA3P55318 SHC1-204ENST00000368450 3059 ntAPPRIS ALT1 TSL 1 (best) BASIC12.43□□□□□ -0.42
FOXA3P55318 SHC1-205ENST00000368453 3062 ntAPPRIS P3 TSL 1 (best) BASIC12.43□□□□□ -0.42
FOXA3P55318 SNPH-202ENST00000381873 4995 ntAPPRIS P3 TSL 1 (best) BASIC12.43□□□□□ -0.42
FOXA3P55318 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
FOXA3P55318 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
FOXA3P55318 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC12.43□□□□□ -0.42
FOXA3P55318 KIF1C-201ENST00000320785 7919 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
FOXA3P55318 AC138028.2-202ENST00000567968 4528 ntTSL 2 BASIC12.43□□□□□ -0.42
FOXA3P55318 TRIM71-201ENST00000383763 8685 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
FOXA3P55318 HARS-204ENST00000438307 1789 ntTSL 2 BASIC12.43□□□□□ -0.42
FOXA3P55318 HPGD-202ENST00000296522 3027 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
FOXA3P55318 NUP98-203ENST00000359171 7023 ntTSL 5 BASIC12.43□□□□□ -0.42
FOXA3P55318 PDPK1-201ENST00000268673 4728 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
FOXA3P55318 TUSC3-201ENST00000382020 3683 ntAPPRIS ALT1 TSL 1 (best) BASIC12.43□□□□□ -0.42
FOXA3P55318 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
FOXA3P55318 COX11-201ENST00000299335 2497 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
FOXA3P55318 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC12.43□□□□□ -0.42
FOXA3P55318 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC12.43□□□□□ -0.42
FOXA3P55318 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC12.43□□□□□ -0.42
FOXA3P55318 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC12.43□□□□□ -0.42
FOXA3P55318 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC12.43□□□□□ -0.42
FOXA3P55318 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC12.43□□□□□ -0.42
FOXA3P55318 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC12.43□□□□□ -0.42
FOXA3P55318 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC12.43□□□□□ -0.42
FOXA3P55318 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC12.43□□□□□ -0.42
FOXA3P55318 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC12.43□□□□□ -0.42
FOXA3P55318 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC12.43□□□□□ -0.42
FOXA3P55318 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC12.43□□□□□ -0.42
FOXA3P55318 AC010947.1-201ENST00000623454 693 ntBASIC12.43□□□□□ -0.42
FOXA3P55318 HECW1-203ENST00000453890 5169 ntAPPRIS ALT2 TSL 2 BASIC12.43□□□□□ -0.42
FOXA3P55318 SLC4A9-203ENST00000506545 2838 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
FOXA3P55318 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC12.43□□□□□ -0.42
FOXA3P55318 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC12.43□□□□□ -0.42
FOXA3P55318 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
FOXA3P55318 GNAO1-201ENST00000262493 3337 ntAPPRIS P5 TSL 1 (best) BASIC12.43□□□□□ -0.42
FOXA3P55318 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
FOXA3P55318 FAM160A2-203ENST00000524416 3327 ntTSL 2 BASIC12.43□□□□□ -0.42
FOXA3P55318 ARVCF-202ENST00000401994 2700 ntTSL 5 BASIC12.43□□□□□ -0.42
FOXA3P55318 TSC22D1-211ENST00000501704 4026 ntTSL 2 BASIC12.43□□□□□ -0.42
FOXA3P55318 MAGEA12-202ENST00000393869 1761 ntAPPRIS P1 TSL 2 BASIC12.43□□□□□ -0.42
FOXA3P55318 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC12.43□□□□□ -0.42
FOXA3P55318 GJB6-202ENST00000356192 2131 ntAPPRIS P1 TSL 2 BASIC12.43□□□□□ -0.42
FOXA3P55318 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
FOXA3P55318 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC12.43□□□□□ -0.42
FOXA3P55318 ARMCX4-202ENST00000423738 7424 ntAPPRIS P1 TSL 5 BASIC12.43□□□□□ -0.42
FOXA3P55318 ARL10-201ENST00000310389 10845 ntAPPRIS P1 TSL 2 BASIC12.42□□□□□ -0.42
FOXA3P55318 SLC25A4-201ENST00000281456 4440 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
FOXA3P55318 TP53I11-201ENST00000308212 3683 ntAPPRIS P1 TSL 5 BASIC12.42□□□□□ -0.42
FOXA3P55318 KLF11-205ENST00000535335 4033 ntAPPRIS ALT2 TSL 2 BASIC12.42□□□□□ -0.42
FOXA3P55318 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC12.42□□□□□ -0.42
FOXA3P55318 TRIP10-210ENST00000600428 2249 ntTSL 5 BASIC12.42□□□□□ -0.42
FOXA3P55318 SUCO-204ENST00000608151 5790 ntTSL 5 BASIC12.42□□□□□ -0.42
FOXA3P55318 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC12.42□□□□□ -0.42
FOXA3P55318 PTPRU-204ENST00000428026 5550 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
FOXA3P55318 SYT9-201ENST00000318881 3955 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
FOXA3P55318 MME-217ENST00000616757 1315 ntTSL 5 BASIC12.42□□□□□ -0.42
FOXA3P55318 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC12.42□□□□□ -0.42
FOXA3P55318 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
FOXA3P55318 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
FOXA3P55318 CCDC183-AS1-201ENST00000414656 2386 ntTSL 2 BASIC12.42□□□□□ -0.42
FOXA3P55318 SPPL3-201ENST00000353487 4148 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
FOXA3P55318 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC12.42□□□□□ -0.42
FOXA3P55318 CCNY-201ENST00000265375 4768 ntAPPRIS ALT1 TSL 1 (best) BASIC12.42□□□□□ -0.42
FOXA3P55318 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
FOXA3P55318 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC12.42□□□□□ -0.42
FOXA3P55318 EDN3-201ENST00000311585 2655 ntAPPRIS ALT2 TSL 1 (best) BASIC12.42□□□□□ -0.42
FOXA3P55318 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
FOXA3P55318 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
FOXA3P55318 MED29-204ENST00000599213 2490 ntAPPRIS ALT2 TSL 1 (best) BASIC12.42□□□□□ -0.42
FOXA3P55318 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
FOXA3P55318 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
FOXA3P55318 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC12.42□□□□□ -0.42
FOXA3P55318 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
FOXA3P55318 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC12.42□□□□□ -0.42
FOXA3P55318 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC12.42□□□□□ -0.42
FOXA3P55318 AP002414.1-201ENST00000391405 1147 ntBASIC12.42□□□□□ -0.42
FOXA3P55318 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
FOXA3P55318 LINC02447-202ENST00000501888 2146 ntBASIC12.42□□□□□ -0.42
FOXA3P55318 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC12.42□□□□□ -0.42
FOXA3P55318 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC12.42□□□□□ -0.42
FOXA3P55318 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC12.42□□□□□ -0.42
FOXA3P55318 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC12.42□□□□□ -0.42
FOXA3P55318 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC12.42□□□□□ -0.42
FOXA3P55318 HARS-203ENST00000431330 1774 ntTSL 2 BASIC12.42□□□□□ -0.42
FOXA3P55318 GLIDR-204ENST00000638724 1765 ntTSL 5 BASIC12.42□□□□□ -0.42
Retrieved 100 of 98,524 protein–RNA pairs in 53.9 ms