Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
CTCFP49711 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC18.96■□□□□ 0.63
CTCFP49711 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
CTCFP49711 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC18.96■□□□□ 0.63
CTCFP49711 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC18.96■□□□□ 0.63
CTCFP49711 LINC00593-202ENST00000560853 1483 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
CTCFP49711 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
CTCFP49711 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC18.96■□□□□ 0.63
CTCFP49711 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC18.95■□□□□ 0.62
CTCFP49711 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
CTCFP49711 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC18.95■□□□□ 0.62
CTCFP49711 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CTCFP49711 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CTCFP49711 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC18.95■□□□□ 0.62
CTCFP49711 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC18.95■□□□□ 0.62
CTCFP49711 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC18.95■□□□□ 0.62
CTCFP49711 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC18.95■□□□□ 0.62
CTCFP49711 B9D1-202ENST00000268841 755 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
CTCFP49711 NOSIP-201ENST00000339093 1000 ntAPPRIS ALT1 TSL 5 BASIC18.95■□□□□ 0.62
CTCFP49711 IP6K2-202ENST00000340879 1185 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
CTCFP49711 MIR326-201ENST00000362220 95 ntBASIC18.95■□□□□ 0.62
CTCFP49711 MIR33B-201ENST00000385104 96 ntBASIC18.95■□□□□ 0.62
CTCFP49711 CHL1-AS2-203ENST00000452919 726 ntTSL 2 BASIC18.95■□□□□ 0.62
CTCFP49711 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC18.95■□□□□ 0.62
CTCFP49711 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
CTCFP49711 MCPH1-AS1-203ENST00000525186 869 ntTSL 3 BASIC18.95■□□□□ 0.62
CTCFP49711 OVOL1-AS1-202ENST00000532454 494 ntTSL 2 BASIC18.95■□□□□ 0.62
CTCFP49711 AC008750.2-202ENST00000532688 729 ntTSL 3 BASIC18.95■□□□□ 0.62
CTCFP49711 AC105105.3-201ENST00000585470 646 ntTSL 5 BASIC18.95■□□□□ 0.62
CTCFP49711 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC18.95■□□□□ 0.62
CTCFP49711 YIF1B-214ENST00000591784 940 ntTSL 5 BASIC18.95■□□□□ 0.62
CTCFP49711 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC18.95■□□□□ 0.62
CTCFP49711 CU634019.7-201ENST00000624153 1185 ntBASIC18.95■□□□□ 0.62
CTCFP49711 FP236241.2-201ENST00000624906 1185 ntBASIC18.95■□□□□ 0.62
CTCFP49711 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CTCFP49711 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CTCFP49711 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CTCFP49711 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC18.95■□□□□ 0.62
CTCFP49711 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CTCFP49711 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CTCFP49711 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC18.95■□□□□ 0.62
CTCFP49711 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC18.95■□□□□ 0.62
CTCFP49711 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC18.95■□□□□ 0.62
CTCFP49711 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC18.95■□□□□ 0.62
CTCFP49711 POR-209ENST00000439269 1858 ntTSL 2 BASIC18.94■□□□□ 0.62
CTCFP49711 KRT8P12-202ENST00000472924 1397 ntBASIC18.94■□□□□ 0.62
CTCFP49711 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC18.94■□□□□ 0.62
CTCFP49711 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CTCFP49711 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
CTCFP49711 AL607033.1-201ENST00000623900 1599 ntBASIC18.94■□□□□ 0.62
CTCFP49711 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CTCFP49711 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CTCFP49711 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC18.94■□□□□ 0.62
CTCFP49711 REXO1L9P-201ENST00000604264 2108 ntBASIC18.94■□□□□ 0.62
CTCFP49711 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC18.94■□□□□ 0.62
CTCFP49711 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC18.94■□□□□ 0.62
CTCFP49711 DEK-201ENST00000244776 1441 ntTSL 2 BASIC18.94■□□□□ 0.62
CTCFP49711 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC18.94■□□□□ 0.62
CTCFP49711 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC18.94■□□□□ 0.62
CTCFP49711 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CTCFP49711 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
CTCFP49711 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC18.94■□□□□ 0.62
CTCFP49711 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
CTCFP49711 KRTAP19-7-201ENST00000334849 440 ntAPPRIS P1 BASIC18.94■□□□□ 0.62
CTCFP49711 MGST3-203ENST00000367885 680 ntTSL 2 BASIC18.94■□□□□ 0.62
CTCFP49711 APOA1-204ENST00000375323 1088 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CTCFP49711 AC018467.1-201ENST00000421581 717 ntTSL 5 BASIC18.94■□□□□ 0.62
CTCFP49711 RPL28-203ENST00000428193 573 ntTSL 2 BASIC18.94■□□□□ 0.62
CTCFP49711 AC080188.2-201ENST00000508985 552 ntTSL 4 BASIC18.94■□□□□ 0.62
CTCFP49711 FAM86HP-204ENST00000513466 959 ntBASIC18.94■□□□□ 0.62
CTCFP49711 SPAG5-AS1-203ENST00000554154 491 ntTSL 2 BASIC18.94■□□□□ 0.62
CTCFP49711 RPL28-207ENST00000558815 616 ntTSL 2 BASIC18.94■□□□□ 0.62
CTCFP49711 YIF1B-216ENST00000592694 1181 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
CTCFP49711 LINC02351-201ENST00000614728 289 ntTSL 2 BASIC18.94■□□□□ 0.62
CTCFP49711 ANXA2R-202ENST00000616064 1265 ntAPPRIS P1 BASIC18.94■□□□□ 0.62
CTCFP49711 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC18.94■□□□□ 0.62
CTCFP49711 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC18.94■□□□□ 0.62
CTCFP49711 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CTCFP49711 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC18.94■□□□□ 0.62
CTCFP49711 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC18.94■□□□□ 0.62
CTCFP49711 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CTCFP49711 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC18.94■□□□□ 0.62
CTCFP49711 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CTCFP49711 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
CTCFP49711 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
CTCFP49711 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
CTCFP49711 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
CTCFP49711 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC18.93■□□□□ 0.62
CTCFP49711 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
CTCFP49711 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
CTCFP49711 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC18.93■□□□□ 0.62
CTCFP49711 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CTCFP49711 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
CTCFP49711 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
CTCFP49711 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CTCFP49711 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CTCFP49711 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CTCFP49711 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
CTCFP49711 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC18.93■□□□□ 0.62
CTCFP49711 SDHAF4-201ENST00000370474 1196 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 32.8 ms