Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 UBE2G2-202ENST00000345496 3566 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
CDX1P47902 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC13.55□□□□□ -0.24
CDX1P47902 PLXND1-201ENST00000324093 7094 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
CDX1P47902 UBTF-201ENST00000302904 4997 ntAPPRIS P1 TSL 2 BASIC13.54□□□□□ -0.24
CDX1P47902 EPOP-201ENST00000621654 3719 ntAPPRIS P1 BASIC13.54□□□□□ -0.24
CDX1P47902 SOGA3-201ENST00000465909 3756 ntTSL 5 BASIC13.54□□□□□ -0.24
CDX1P47902 RUNDC1-201ENST00000361677 3828 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
CDX1P47902 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
CDX1P47902 COCH-202ENST00000396618 2536 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
CDX1P47902 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
CDX1P47902 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
CDX1P47902 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
CDX1P47902 SNX18-202ENST00000343017 3140 ntBASIC13.54□□□□□ -0.24
CDX1P47902 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
CDX1P47902 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC13.54□□□□□ -0.24
CDX1P47902 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC13.54□□□□□ -0.24
CDX1P47902 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC13.54□□□□□ -0.24
CDX1P47902 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC13.54□□□□□ -0.24
CDX1P47902 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC13.54□□□□□ -0.24
CDX1P47902 AL049840.3-201ENST00000602669 611 ntBASIC13.54□□□□□ -0.24
CDX1P47902 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC13.54□□□□□ -0.24
CDX1P47902 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC13.54□□□□□ -0.24
CDX1P47902 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC13.54□□□□□ -0.24
CDX1P47902 PGM5P2-202ENST00000637225 1043 ntBASIC13.54□□□□□ -0.24
CDX1P47902 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC13.54□□□□□ -0.24
CDX1P47902 CLIC6-202ENST00000360731 3860 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
CDX1P47902 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC13.54□□□□□ -0.24
CDX1P47902 GSPT1-202ENST00000434724 7105 ntAPPRIS P4 TSL 1 (best) BASIC13.54□□□□□ -0.24
CDX1P47902 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC13.54□□□□□ -0.24
CDX1P47902 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
CDX1P47902 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
CDX1P47902 FAM219A-204ENST00000379081 3543 ntTSL 5 BASIC13.54□□□□□ -0.24
CDX1P47902 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
CDX1P47902 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
CDX1P47902 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
CDX1P47902 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC13.54□□□□□ -0.24
CDX1P47902 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
CDX1P47902 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC13.54□□□□□ -0.24
CDX1P47902 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC13.54□□□□□ -0.24
CDX1P47902 AC005915.1-201ENST00000624912 2018 ntBASIC13.54□□□□□ -0.24
CDX1P47902 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC13.54□□□□□ -0.24
CDX1P47902 SPHK2-210ENST00000599748 2683 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
CDX1P47902 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC13.54□□□□□ -0.24
CDX1P47902 AC009336.1-201ENST00000608941 1553 ntBASIC13.54□□□□□ -0.24
CDX1P47902 UHRF2-201ENST00000276893 3452 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
CDX1P47902 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC13.53□□□□□ -0.24
CDX1P47902 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CDX1P47902 SENP6-205ENST00000447266 6501 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
CDX1P47902 ZNF451-203ENST00000370706 5268 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
CDX1P47902 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC13.53□□□□□ -0.24
CDX1P47902 PPP2CA-203ENST00000481195 4649 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CDX1P47902 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC13.53□□□□□ -0.24
CDX1P47902 STAT5A-211ENST00000590949 3318 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CDX1P47902 KIAA1211-206ENST00000541073 4117 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
CDX1P47902 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC13.53□□□□□ -0.24
CDX1P47902 MAP4K1-210ENST00000591517 2700 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
CDX1P47902 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC13.53□□□□□ -0.24
CDX1P47902 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC13.53□□□□□ -0.24
CDX1P47902 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC13.53□□□□□ -0.24
CDX1P47902 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
CDX1P47902 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CDX1P47902 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
CDX1P47902 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC13.53□□□□□ -0.24
CDX1P47902 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CDX1P47902 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
CDX1P47902 S100A2-206ENST00000497140 697 ntTSL 2 BASIC13.53□□□□□ -0.24
CDX1P47902 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC13.53□□□□□ -0.24
CDX1P47902 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC13.53□□□□□ -0.24
CDX1P47902 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC13.53□□□□□ -0.24
CDX1P47902 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC13.53□□□□□ -0.24
CDX1P47902 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC13.53□□□□□ -0.24
CDX1P47902 AC004817.3-201ENST00000602957 2129 ntBASIC13.53□□□□□ -0.24
CDX1P47902 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC13.53□□□□□ -0.24
CDX1P47902 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC13.53□□□□□ -0.24
CDX1P47902 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
CDX1P47902 AC114490.1-201ENST00000417456 3163 ntTSL 2 BASIC13.53□□□□□ -0.24
CDX1P47902 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
CDX1P47902 AGPS-201ENST00000264167 7764 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CDX1P47902 AC243591.1-201ENST00000452967 1364 ntBASIC13.53□□□□□ -0.24
CDX1P47902 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
CDX1P47902 EPS8L2-223ENST00000533256 3266 ntAPPRIS P2 TSL 5 BASIC13.53□□□□□ -0.24
CDX1P47902 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC13.53□□□□□ -0.24
CDX1P47902 NCF1C-201ENST00000438382 1427 ntBASIC13.53□□□□□ -0.24
CDX1P47902 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CDX1P47902 IGSF1-204ENST00000370903 4594 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
CDX1P47902 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC13.53□□□□□ -0.24
CDX1P47902 ELAVL3-201ENST00000359227 4729 ntAPPRIS P3 TSL 3 BASIC13.53□□□□□ -0.24
CDX1P47902 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC13.53□□□□□ -0.24
CDX1P47902 ALG1-204ENST00000588623 2671 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
CDX1P47902 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC13.53□□□□□ -0.24
CDX1P47902 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC13.53□□□□□ -0.24
CDX1P47902 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC13.53□□□□□ -0.24
CDX1P47902 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
CDX1P47902 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
CDX1P47902 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC13.53□□□□□ -0.24
CDX1P47902 MED26-201ENST00000263390 3174 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CDX1P47902 DZIP1-203ENST00000361396 7418 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.24
CDX1P47902 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC13.52□□□□□ -0.24
CDX1P47902 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
CDX1P47902 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 38.4 ms