Protein–RNA interactions for Protein: P40938

RFC3, Replication factor C subunit 3, humanhuman

Predictions only

Length 356 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3P40938 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC15.1■□□□□ 0.01
RFC3P40938 BCRP1-201ENST00000444246 691 ntBASIC15.1■□□□□ 0.01
RFC3P40938 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC15.1■□□□□ 0.01
RFC3P40938 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC15.1■□□□□ 0.01
RFC3P40938 KLF2P3-201ENST00000451977 1087 ntBASIC15.1■□□□□ 0.01
RFC3P40938 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC15.1■□□□□ 0.01
RFC3P40938 KRT18P34-201ENST00000488218 1270 ntBASIC15.1■□□□□ 0.01
RFC3P40938 AC067863.1-201ENST00000494933 530 ntBASIC15.1■□□□□ 0.01
RFC3P40938 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC15.1■□□□□ 0.01
RFC3P40938 ALG1L8P-201ENST00000533887 760 ntBASIC15.1■□□□□ 0.01
RFC3P40938 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC15.1■□□□□ 0.01
RFC3P40938 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC15.1■□□□□ 0.01
RFC3P40938 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC15.1■□□□□ 0.01
RFC3P40938 DUT-210ENST00000559935 569 ntTSL 3 BASIC15.1■□□□□ 0.01
RFC3P40938 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
RFC3P40938 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC15.1■□□□□ 0.01
RFC3P40938 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
RFC3P40938 AC092850.2-201ENST00000623821 2697 ntBASIC15.1■□□□□ 0.01
RFC3P40938 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
RFC3P40938 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC15.1■□□□□ 0.01
RFC3P40938 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
RFC3P40938 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC15.1■□□□□ 0.01
RFC3P40938 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
RFC3P40938 FAM83A-202ENST00000518448 5393 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
RFC3P40938 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC15.1■□□□□ 0.01
RFC3P40938 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
RFC3P40938 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC15.1■□□□□ 0.01
RFC3P40938 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC15.1■□□□□ 0.01
RFC3P40938 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC15.1■□□□□ 0.01
RFC3P40938 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
RFC3P40938 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
RFC3P40938 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
RFC3P40938 RTN3-205ENST00000356000 2645 ntTSL 2 BASIC15.1■□□□□ 0.01
RFC3P40938 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC15.1■□□□□ 0.01
RFC3P40938 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC15.1■□□□□ 0.01
RFC3P40938 FAM135A-205ENST00000418814 6415 ntTSL 5 BASIC15.1■□□□□ 0.01
RFC3P40938 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
RFC3P40938 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC15.09■□□□□ 0.01
RFC3P40938 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC15.09■□□□□ 0.01
RFC3P40938 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
RFC3P40938 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
RFC3P40938 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
RFC3P40938 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC15.09■□□□□ 0.01
RFC3P40938 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
RFC3P40938 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
RFC3P40938 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC15.09■□□□□ 0.01
RFC3P40938 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC15.09■□□□□ 0.01
RFC3P40938 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
RFC3P40938 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC15.09■□□□□ 0.01
RFC3P40938 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
RFC3P40938 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
RFC3P40938 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
RFC3P40938 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
RFC3P40938 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
RFC3P40938 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
RFC3P40938 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
RFC3P40938 KDM6A-202ENST00000382899 5789 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
RFC3P40938 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
RFC3P40938 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
RFC3P40938 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
RFC3P40938 PLIN1-201ENST00000300055 2953 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
RFC3P40938 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC15.09■□□□□ 0.01
RFC3P40938 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
RFC3P40938 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
RFC3P40938 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC15.09■□□□□ 0.01
RFC3P40938 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
RFC3P40938 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
RFC3P40938 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC15.09■□□□□ 0.01
RFC3P40938 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC15.09■□□□□ 0.01
RFC3P40938 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC15.09■□□□□ 0.01
RFC3P40938 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC15.09■□□□□ 0.01
RFC3P40938 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC15.09■□□□□ 0.01
RFC3P40938 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC15.09■□□□□ 0.01
RFC3P40938 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC15.09■□□□□ 0.01
RFC3P40938 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC15.09■□□□□ 0.01
RFC3P40938 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
RFC3P40938 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC15.09■□□□□ 0.01
RFC3P40938 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC15.09■□□□□ 0.01
RFC3P40938 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
RFC3P40938 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
RFC3P40938 SLC34A2-202ENST00000503434 2174 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
RFC3P40938 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC15.09■□□□□ 0.01
RFC3P40938 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
RFC3P40938 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC15.09■□□□□ 0.01
RFC3P40938 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC15.09■□□□□ 0.01
RFC3P40938 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
RFC3P40938 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
RFC3P40938 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
RFC3P40938 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC15.09■□□□□ 0.01
RFC3P40938 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
RFC3P40938 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
RFC3P40938 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
RFC3P40938 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
RFC3P40938 RTEL1-TNFRSF6B-202ENST00000482936 4931 ntAPPRIS P5 TSL 2 BASIC15.09■□□□□ 0.01
RFC3P40938 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC15.08■□□□□ 0.01
RFC3P40938 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC15.08■□□□□ 0.01
RFC3P40938 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC15.08■□□□□ 0.01
RFC3P40938 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
RFC3P40938 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
RFC3P40938 SATB1-201ENST00000338745 7810 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 41.4 ms