Protein–RNA interactions for Protein: P35249

RFC4, Replication factor C subunit 4, humanhuman

Predictions only

Length 363 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC4P35249 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC20.49■□□□□ 0.87
RFC4P35249 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC20.49■□□□□ 0.87
RFC4P35249 AL031731.1-201ENST00000642131 2094 ntBASIC20.49■□□□□ 0.87
RFC4P35249 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC20.49■□□□□ 0.87
RFC4P35249 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
RFC4P35249 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC20.48■□□□□ 0.87
RFC4P35249 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
RFC4P35249 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
RFC4P35249 KRT8P44-201ENST00000441609 1350 ntBASIC20.48■□□□□ 0.87
RFC4P35249 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC20.48■□□□□ 0.87
RFC4P35249 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC20.48■□□□□ 0.87
RFC4P35249 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC20.48■□□□□ 0.87
RFC4P35249 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
RFC4P35249 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC20.48■□□□□ 0.87
RFC4P35249 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC20.48■□□□□ 0.87
RFC4P35249 PLSCR4-204ENST00000446574 1442 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
RFC4P35249 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC20.48■□□□□ 0.87
RFC4P35249 MRPL55-215ENST00000366742 630 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
RFC4P35249 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
RFC4P35249 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC20.48■□□□□ 0.87
RFC4P35249 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
RFC4P35249 GUSBP2-202ENST00000479900 1203 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
RFC4P35249 C11orf98-201ENST00000524958 654 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
RFC4P35249 RCN1-210ENST00000532942 1191 ntAPPRIS ALT2 TSL 2 BASIC20.48■□□□□ 0.87
RFC4P35249 BX927359.1-201ENST00000556073 543 ntTSL 2 BASIC20.48■□□□□ 0.87
RFC4P35249 PAM16-215ENST00000577031 548 ntTSL 4 BASIC20.48■□□□□ 0.87
RFC4P35249 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
RFC4P35249 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
RFC4P35249 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC20.48■□□□□ 0.87
RFC4P35249 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC20.48■□□□□ 0.87
RFC4P35249 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
RFC4P35249 NEFHP1-201ENST00000412845 2629 ntBASIC20.48■□□□□ 0.87
RFC4P35249 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
RFC4P35249 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC20.48■□□□□ 0.87
RFC4P35249 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
RFC4P35249 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
RFC4P35249 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
RFC4P35249 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC20.47■□□□□ 0.87
RFC4P35249 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC20.47■□□□□ 0.87
RFC4P35249 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
RFC4P35249 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
RFC4P35249 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC20.47■□□□□ 0.87
RFC4P35249 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC20.47■□□□□ 0.87
RFC4P35249 PSMC5-209ENST00000580864 1552 ntTSL 5 BASIC20.47■□□□□ 0.87
RFC4P35249 KRT8P22-201ENST00000562317 1415 ntBASIC20.47■□□□□ 0.87
RFC4P35249 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
RFC4P35249 HIST1H2AD-201ENST00000341023 393 ntAPPRIS P1 BASIC20.47■□□□□ 0.87
RFC4P35249 LINC01759-201ENST00000412639 985 ntTSL 3 BASIC20.47■□□□□ 0.87
RFC4P35249 AC103563.7-201ENST00000448734 478 ntTSL 3 BASIC20.47■□□□□ 0.87
RFC4P35249 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC20.47■□□□□ 0.87
RFC4P35249 AC106772.2-201ENST00000515085 442 ntTSL 3 BASIC20.47■□□□□ 0.87
RFC4P35249 AC109479.1-201ENST00000519603 624 ntTSL 2 BASIC20.47■□□□□ 0.87
RFC4P35249 SUOX-214ENST00000551841 906 ntTSL 3 BASIC20.47■□□□□ 0.87
RFC4P35249 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC20.47■□□□□ 0.87
RFC4P35249 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC20.47■□□□□ 0.87
RFC4P35249 AC079336.2-201ENST00000578408 927 ntTSL 3 BASIC20.47■□□□□ 0.87
RFC4P35249 ZSCAN30-208ENST00000592278 731 ntTSL 4 BASIC20.47■□□□□ 0.87
RFC4P35249 TECR-207ENST00000596073 1170 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
RFC4P35249 TECR-220ENST00000600083 1204 ntTSL 2 BASIC20.47■□□□□ 0.87
RFC4P35249 NDUFS7-219ENST00000620479 754 ntTSL 5 BASIC20.47■□□□□ 0.87
RFC4P35249 ABBA01031660.1-201ENST00000635219 756 ntBASIC20.47■□□□□ 0.87
RFC4P35249 OR2T27-203ENST00000641652 1285 ntAPPRIS P1 BASIC20.47■□□□□ 0.87
RFC4P35249 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC20.47■□□□□ 0.87
RFC4P35249 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
RFC4P35249 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
RFC4P35249 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
RFC4P35249 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC20.47■□□□□ 0.87
RFC4P35249 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
RFC4P35249 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
RFC4P35249 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC20.47■□□□□ 0.87
RFC4P35249 AL136982.4-201ENST00000437689 1740 ntBASIC20.47■□□□□ 0.87
RFC4P35249 PAQR6-214ENST00000613336 1599 ntTSL 3 BASIC20.46■□□□□ 0.87
RFC4P35249 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
RFC4P35249 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC20.46■□□□□ 0.87
RFC4P35249 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC20.46■□□□□ 0.87
RFC4P35249 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC20.46■□□□□ 0.87
RFC4P35249 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
RFC4P35249 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
RFC4P35249 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
RFC4P35249 AC067852.2-201ENST00000590513 2313 ntBASIC20.46■□□□□ 0.87
RFC4P35249 AL645728.1-201ENST00000366221 2101 ntBASIC20.46■□□□□ 0.87
RFC4P35249 AC046168.2-201ENST00000560590 875 ntTSL 3 BASIC20.46■□□□□ 0.87
RFC4P35249 APRT-204ENST00000563655 709 ntTSL 5 BASIC20.46■□□□□ 0.87
RFC4P35249 AC009134.1-201ENST00000571939 443 ntTSL 3 BASIC20.46■□□□□ 0.87
RFC4P35249 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC20.46■□□□□ 0.87
RFC4P35249 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
RFC4P35249 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC20.46■□□□□ 0.87
RFC4P35249 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
RFC4P35249 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
RFC4P35249 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
RFC4P35249 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC20.46■□□□□ 0.87
RFC4P35249 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
RFC4P35249 CYP4F24P-201ENST00000586049 1580 ntBASIC20.46■□□□□ 0.87
RFC4P35249 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
RFC4P35249 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
RFC4P35249 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
RFC4P35249 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
RFC4P35249 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC20.45■□□□□ 0.86
RFC4P35249 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC20.45■□□□□ 0.86
RFC4P35249 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 27.3 ms