Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 ST14-201ENST00000278742 3539 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
TPM1P09493 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
TPM1P09493 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
TPM1P09493 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC18.24■□□□□ 0.51
TPM1P09493 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC18.24■□□□□ 0.51
TPM1P09493 LINC00265-3P-201ENST00000447588 903 ntBASIC18.24■□□□□ 0.51
TPM1P09493 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC18.24■□□□□ 0.51
TPM1P09493 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC18.24■□□□□ 0.51
TPM1P09493 AL603832.2-201ENST00000566195 2125 ntBASIC18.24■□□□□ 0.51
TPM1P09493 CYB561-217ENST00000582997 877 ntTSL 5 BASIC18.24■□□□□ 0.51
TPM1P09493 AL353135.1-201ENST00000606729 504 ntBASIC18.24■□□□□ 0.51
TPM1P09493 LINC02551-202ENST00000533812 2203 ntTSL 5 BASIC18.24■□□□□ 0.51
TPM1P09493 SAP130-201ENST00000259234 4140 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
TPM1P09493 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
TPM1P09493 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
TPM1P09493 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
TPM1P09493 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
TPM1P09493 ABTB1-206ENST00000468137 2065 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
TPM1P09493 AC097376.2-205ENST00000610159 5334 ntBASIC18.24■□□□□ 0.51
TPM1P09493 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
TPM1P09493 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
TPM1P09493 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC18.23■□□□□ 0.51
TPM1P09493 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC18.23■□□□□ 0.51
TPM1P09493 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
TPM1P09493 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
TPM1P09493 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
TPM1P09493 NPAS2-201ENST00000335681 4007 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
TPM1P09493 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
TPM1P09493 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
TPM1P09493 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
TPM1P09493 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC18.23■□□□□ 0.51
TPM1P09493 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
TPM1P09493 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC18.23■□□□□ 0.51
TPM1P09493 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
TPM1P09493 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC18.23■□□□□ 0.51
TPM1P09493 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC18.23■□□□□ 0.51
TPM1P09493 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
TPM1P09493 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
TPM1P09493 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC18.23■□□□□ 0.51
TPM1P09493 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC18.23■□□□□ 0.51
TPM1P09493 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC18.23■□□□□ 0.51
TPM1P09493 TPSP2-201ENST00000561760 610 ntBASIC18.23■□□□□ 0.51
TPM1P09493 AC074051.2-201ENST00000565115 352 ntBASIC18.23■□□□□ 0.51
TPM1P09493 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC18.23■□□□□ 0.51
TPM1P09493 TNFRSF11A-202ENST00000586569 8147 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
TPM1P09493 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
TPM1P09493 SHH-201ENST00000297261 4454 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
TPM1P09493 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
TPM1P09493 DBET-201ENST00000630918 3363 ntBASIC18.23■□□□□ 0.51
TPM1P09493 LMNB1-201ENST00000261366 2878 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
TPM1P09493 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC18.23■□□□□ 0.51
TPM1P09493 AC092718.8-201ENST00000640345 2892 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
TPM1P09493 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
TPM1P09493 NCF1C-201ENST00000438382 1427 ntBASIC18.23■□□□□ 0.51
TPM1P09493 AC005332.1-201ENST00000577698 1310 ntBASIC18.23■□□□□ 0.51
TPM1P09493 MYO3A-201ENST00000265944 5581 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
TPM1P09493 ASIC1-202ENST00000447966 3778 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
TPM1P09493 ABCC10-201ENST00000244533 5088 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
TPM1P09493 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
TPM1P09493 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC18.22■□□□□ 0.51
TPM1P09493 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
TPM1P09493 STBD1-201ENST00000237642 3420 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
TPM1P09493 KHDRBS1-202ENST00000327300 2757 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
TPM1P09493 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
TPM1P09493 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC18.22■□□□□ 0.51
TPM1P09493 CUL7-203ENST00000535468 5504 ntAPPRIS ALT2 TSL 2 BASIC18.22■□□□□ 0.51
TPM1P09493 ZBTB7C-204ENST00000586438 4899 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
TPM1P09493 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
TPM1P09493 SEC16A-202ENST00000290037 8982 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
TPM1P09493 SRPK1-204ENST00000373825 4592 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
TPM1P09493 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
TPM1P09493 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
TPM1P09493 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
TPM1P09493 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
TPM1P09493 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
TPM1P09493 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
TPM1P09493 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
TPM1P09493 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC18.22■□□□□ 0.51
TPM1P09493 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC18.22■□□□□ 0.51
TPM1P09493 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
TPM1P09493 POU5F1P6-201ENST00000466990 990 ntBASIC18.22■□□□□ 0.51
TPM1P09493 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC18.22■□□□□ 0.51
TPM1P09493 AC104819.1-201ENST00000504587 486 ntBASIC18.22■□□□□ 0.51
TPM1P09493 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
TPM1P09493 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC18.22■□□□□ 0.51
TPM1P09493 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC18.22■□□□□ 0.51
TPM1P09493 CAMK2D-205ENST00000394524 5294 ntAPPRIS ALT1 TSL 2 BASIC18.22■□□□□ 0.51
TPM1P09493 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC18.22■□□□□ 0.51
TPM1P09493 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC18.22■□□□□ 0.51
TPM1P09493 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC18.22■□□□□ 0.51
TPM1P09493 TNS2-201ENST00000314250 5010 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
TPM1P09493 LONRF1-201ENST00000398246 3594 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
TPM1P09493 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC18.22■□□□□ 0.51
TPM1P09493 KRT8P39-201ENST00000396270 1433 ntBASIC18.22■□□□□ 0.51
TPM1P09493 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
TPM1P09493 REEP3-201ENST00000373758 5205 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
TPM1P09493 KDM2B-201ENST00000377069 5224 ntAPPRIS ALT2 TSL 2 BASIC18.22■□□□□ 0.51
TPM1P09493 SYT13-201ENST00000020926 5144 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
TPM1P09493 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
TPM1P09493 AC006058.4-201ENST00000624016 1670 ntBASIC18.22■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 51.6 ms