Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 SEPT6-204ENST00000360156 2609 ntAPPRIS ALT1 TSL 1 (best) BASIC12.82□□□□□ -0.36
CXCL1P09341 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
CXCL1P09341 LINC01184-204ENST00000501702 2977 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
CXCL1P09341 CHN2-201ENST00000222792 3530 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
CXCL1P09341 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
CXCL1P09341 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
CXCL1P09341 C6orf120-201ENST00000332290 2667 ntAPPRIS P1 BASIC12.82□□□□□ -0.36
CXCL1P09341 UBE2D1-201ENST00000373910 2659 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
CXCL1P09341 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
CXCL1P09341 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
CXCL1P09341 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
CXCL1P09341 MIR718-201ENST00000390190 70 ntBASIC12.82□□□□□ -0.36
CXCL1P09341 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC12.82□□□□□ -0.36
CXCL1P09341 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
CXCL1P09341 AL390955.1-201ENST00000428694 934 ntBASIC12.82□□□□□ -0.36
CXCL1P09341 KRT18P48-201ENST00000434763 852 ntBASIC12.82□□□□□ -0.36
CXCL1P09341 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC12.82□□□□□ -0.36
CXCL1P09341 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC12.82□□□□□ -0.36
CXCL1P09341 PPOX-214ENST00000535223 664 ntTSL 3 BASIC12.82□□□□□ -0.36
CXCL1P09341 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC12.82□□□□□ -0.36
CXCL1P09341 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC12.82□□□□□ -0.36
CXCL1P09341 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
CXCL1P09341 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC12.82□□□□□ -0.36
CXCL1P09341 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC12.82□□□□□ -0.36
CXCL1P09341 USF2-205ENST00000594064 1179 ntTSL 2 BASIC12.82□□□□□ -0.36
CXCL1P09341 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC12.82□□□□□ -0.36
CXCL1P09341 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC12.82□□□□□ -0.36
CXCL1P09341 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
CXCL1P09341 ATRNL1-201ENST00000355044 8479 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
CXCL1P09341 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC12.82□□□□□ -0.36
CXCL1P09341 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC12.82□□□□□ -0.36
CXCL1P09341 TMPRSS6-204ENST00000406856 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
CXCL1P09341 E2F6-212ENST00000546212 3191 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
CXCL1P09341 ABR-228ENST00000574437 3196 ntTSL 5 BASIC12.82□□□□□ -0.36
CXCL1P09341 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
CXCL1P09341 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC12.82□□□□□ -0.36
CXCL1P09341 AC097374.2-201ENST00000618617 1306 ntBASIC12.82□□□□□ -0.36
CXCL1P09341 MAP4K5-201ENST00000013125 4354 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
CXCL1P09341 LIMK2-204ENST00000406516 2657 ntTSL 5 BASIC12.82□□□□□ -0.36
CXCL1P09341 DDR1-271ENST00000513240 2882 ntAPPRIS ALT2 TSL 5 BASIC12.82□□□□□ -0.36
CXCL1P09341 PRDM4-201ENST00000228437 4210 ntAPPRIS P1 TSL 2 BASIC12.82□□□□□ -0.36
CXCL1P09341 GRIK5-201ENST00000262895 3493 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
CXCL1P09341 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
CXCL1P09341 CXorf36-201ENST00000377934 2513 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
CXCL1P09341 KDM5C-205ENST00000404049 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
CXCL1P09341 STOML1-204ENST00000541638 6336 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
CXCL1P09341 CYB5R3-205ENST00000407623 2153 ntTSL 3 BASIC12.81□□□□□ -0.36
CXCL1P09341 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
CXCL1P09341 AL161772.1-201ENST00000610494 4412 ntBASIC12.81□□□□□ -0.36
CXCL1P09341 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
CXCL1P09341 RTEL1-201ENST00000318100 4676 ntTSL 2 BASIC12.81□□□□□ -0.36
CXCL1P09341 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
CXCL1P09341 PTPRS-205ENST00000588012 5993 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
CXCL1P09341 MYRF-203ENST00000389602 2052 ntTSL 2 BASIC12.81□□□□□ -0.36
CXCL1P09341 RIPK1-201ENST00000259808 4160 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
CXCL1P09341 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
CXCL1P09341 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
CXCL1P09341 PRORSD1P-201ENST00000295112 541 ntBASIC12.81□□□□□ -0.36
CXCL1P09341 Telomerase-vert.1-201ENST00000363312 438 ntBASIC12.81□□□□□ -0.36
CXCL1P09341 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC12.81□□□□□ -0.36
CXCL1P09341 COX5BP2-201ENST00000392354 334 ntBASIC12.81□□□□□ -0.36
CXCL1P09341 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
CXCL1P09341 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC12.81□□□□□ -0.36
CXCL1P09341 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC12.81□□□□□ -0.36
CXCL1P09341 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC12.81□□□□□ -0.36
CXCL1P09341 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC12.81□□□□□ -0.36
CXCL1P09341 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC12.81□□□□□ -0.36
CXCL1P09341 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC12.81□□□□□ -0.36
CXCL1P09341 DKFZP434H168-201ENST00000567381 1905 ntBASIC12.81□□□□□ -0.36
CXCL1P09341 EIF5-202ENST00000392715 3417 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
CXCL1P09341 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
CXCL1P09341 RPS6KL1-201ENST00000354625 5195 ntAPPRIS P1 TSL 2 BASIC12.81□□□□□ -0.36
CXCL1P09341 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC12.81□□□□□ -0.36
CXCL1P09341 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC12.81□□□□□ -0.36
CXCL1P09341 DCAF17-202ENST00000375255 5828 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
CXCL1P09341 RTEL1-205ENST00000370018 4955 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
CXCL1P09341 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC12.81□□□□□ -0.36
CXCL1P09341 PI4K2B-201ENST00000264864 3540 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
CXCL1P09341 PTENP1-202ENST00000532280 3996 ntBASIC12.81□□□□□ -0.36
CXCL1P09341 MME-217ENST00000616757 1315 ntTSL 5 BASIC12.81□□□□□ -0.36
CXCL1P09341 LAPTM5-201ENST00000294507 2223 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
CXCL1P09341 GLG1-201ENST00000205061 8261 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
CXCL1P09341 GCLC-201ENST00000229416 3813 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
CXCL1P09341 RNF150-201ENST00000306799 4535 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
CXCL1P09341 CHTF18-205ENST00000455171 3172 ntAPPRIS ALT2 TSL 2 BASIC12.81□□□□□ -0.36
CXCL1P09341 PMP22-209ENST00000612492 1822 ntAPPRIS P1 TSL 3 BASIC12.81□□□□□ -0.36
CXCL1P09341 SLC20A2-208ENST00000520262 2992 ntAPPRIS P1 TSL 2 BASIC12.81□□□□□ -0.36
CXCL1P09341 AC002310.6-201ENST00000624451 1377 ntBASIC12.81□□□□□ -0.36
CXCL1P09341 DDX50-206ENST00000610822 2510 ntTSL 5 BASIC12.81□□□□□ -0.36
CXCL1P09341 ZNF485-201ENST00000361807 2054 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
CXCL1P09341 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
CXCL1P09341 CSDC2-201ENST00000306149 2777 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
CXCL1P09341 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC12.8□□□□□ -0.36
CXCL1P09341 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC12.8□□□□□ -0.36
CXCL1P09341 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC12.8□□□□□ -0.36
CXCL1P09341 OR2I1P-210ENST00000642037 4691 ntBASIC12.8□□□□□ -0.36
CXCL1P09341 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
CXCL1P09341 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
CXCL1P09341 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC12.8□□□□□ -0.36
CXCL1P09341 MINK1-201ENST00000347992 4863 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Retrieved 100 of 98,524 protein–RNA pairs in 38.2 ms