Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 RN7SL618P-201ENST00000477850 296 ntBASIC15.94■□□□□ 0.14
HOXC4P09017 SPSB2-204ENST00000523102 1205 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
HOXC4P09017 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC15.94■□□□□ 0.14
HOXC4P09017 SPSB2-205ENST00000524270 1236 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
HOXC4P09017 AC190387.1-201ENST00000551683 408 ntBASIC15.94■□□□□ 0.14
HOXC4P09017 AC010336.2-201ENST00000564226 506 ntBASIC15.94■□□□□ 0.14
HOXC4P09017 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC15.94■□□□□ 0.14
HOXC4P09017 MIR6069-201ENST00000620069 79 ntBASIC15.94■□□□□ 0.14
HOXC4P09017 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC15.94■□□□□ 0.14
HOXC4P09017 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC15.94■□□□□ 0.14
HOXC4P09017 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC15.94■□□□□ 0.14
HOXC4P09017 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC15.94■□□□□ 0.14
HOXC4P09017 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC15.94■□□□□ 0.14
HOXC4P09017 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
HOXC4P09017 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
HOXC4P09017 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
HOXC4P09017 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC15.94■□□□□ 0.14
HOXC4P09017 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC15.94■□□□□ 0.14
HOXC4P09017 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
HOXC4P09017 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
HOXC4P09017 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC15.94■□□□□ 0.14
HOXC4P09017 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC15.94■□□□□ 0.14
HOXC4P09017 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC15.94■□□□□ 0.14
HOXC4P09017 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC15.94■□□□□ 0.14
HOXC4P09017 IMPDH1P4-201ENST00000445028 1534 ntBASIC15.94■□□□□ 0.14
HOXC4P09017 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC15.94■□□□□ 0.14
HOXC4P09017 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC15.94■□□□□ 0.14
HOXC4P09017 ACY3-201ENST00000255082 1300 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
HOXC4P09017 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC15.94■□□□□ 0.14
HOXC4P09017 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC15.93■□□□□ 0.14
HOXC4P09017 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC15.93■□□□□ 0.14
HOXC4P09017 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC15.93■□□□□ 0.14
HOXC4P09017 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC15.93■□□□□ 0.14
HOXC4P09017 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC15.93■□□□□ 0.14
HOXC4P09017 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
HOXC4P09017 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC15.93■□□□□ 0.14
HOXC4P09017 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC15.93■□□□□ 0.14
HOXC4P09017 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
HOXC4P09017 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC15.93■□□□□ 0.14
HOXC4P09017 AC022211.2-201ENST00000585075 2527 ntBASIC15.93■□□□□ 0.14
HOXC4P09017 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC15.93■□□□□ 0.14
HOXC4P09017 CCDC182-201ENST00000299415 832 ntAPPRIS P1 BASIC15.93■□□□□ 0.14
HOXC4P09017 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
HOXC4P09017 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC15.93■□□□□ 0.14
HOXC4P09017 FCRLB-204ENST00000367946 1152 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
HOXC4P09017 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
HOXC4P09017 SHBG-204ENST00000441599 973 ntAPPRIS ALT2 TSL 1 (best) BASIC15.93■□□□□ 0.14
HOXC4P09017 COX20P2-201ENST00000452636 358 ntBASIC15.93■□□□□ 0.14
HOXC4P09017 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC15.93■□□□□ 0.14
HOXC4P09017 LINC01605-204ENST00000522718 1093 ntTSL 3 BASIC15.93■□□□□ 0.14
HOXC4P09017 AC138466.1-201ENST00000535242 391 ntTSL 3 BASIC15.93■□□□□ 0.14
HOXC4P09017 POLD4-211ENST00000539074 714 ntTSL 3 BASIC15.93■□□□□ 0.14
HOXC4P09017 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
HOXC4P09017 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC15.93■□□□□ 0.14
HOXC4P09017 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC15.93■□□□□ 0.14
HOXC4P09017 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC15.93■□□□□ 0.14
HOXC4P09017 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC15.93■□□□□ 0.14
HOXC4P09017 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
HOXC4P09017 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
HOXC4P09017 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
HOXC4P09017 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
HOXC4P09017 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC15.93■□□□□ 0.14
HOXC4P09017 UBALD1-205ENST00000590891 2641 ntBASIC15.93■□□□□ 0.14
HOXC4P09017 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
HOXC4P09017 AL691432.1-201ENST00000596308 1422 ntBASIC15.93■□□□□ 0.14
HOXC4P09017 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
HOXC4P09017 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC15.93■□□□□ 0.14
HOXC4P09017 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC15.93■□□□□ 0.14
HOXC4P09017 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
HOXC4P09017 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC15.93■□□□□ 0.14
HOXC4P09017 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
HOXC4P09017 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC15.92■□□□□ 0.14
HOXC4P09017 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
HOXC4P09017 PRKACG-201ENST00000377276 1585 ntAPPRIS P1 BASIC15.92■□□□□ 0.14
HOXC4P09017 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
HOXC4P09017 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC15.92■□□□□ 0.14
HOXC4P09017 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
HOXC4P09017 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC15.92■□□□□ 0.14
HOXC4P09017 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
HOXC4P09017 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC15.92■□□□□ 0.14
HOXC4P09017 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC15.92■□□□□ 0.14
HOXC4P09017 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
HOXC4P09017 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC15.92■□□□□ 0.14
HOXC4P09017 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC15.92■□□□□ 0.14
HOXC4P09017 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC15.92■□□□□ 0.14
HOXC4P09017 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC15.92■□□□□ 0.14
HOXC4P09017 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
HOXC4P09017 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
HOXC4P09017 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC15.92■□□□□ 0.14
HOXC4P09017 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC15.92■□□□□ 0.14
HOXC4P09017 PKIG-202ENST00000372886 1180 ntAPPRIS P1 TSL 2 BASIC15.92■□□□□ 0.14
HOXC4P09017 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC15.92■□□□□ 0.14
HOXC4P09017 SPTLC1P1-201ENST00000447199 261 ntBASIC15.92■□□□□ 0.14
HOXC4P09017 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC15.92■□□□□ 0.14
HOXC4P09017 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
HOXC4P09017 SERBP1P5-201ENST00000510079 1181 ntBASIC15.92■□□□□ 0.14
HOXC4P09017 SDHAP3-202ENST00000515467 728 ntBASIC15.92■□□□□ 0.14
HOXC4P09017 AL512361.1-201ENST00000554200 418 ntBASIC15.92■□□□□ 0.14
HOXC4P09017 COQ9-214ENST00000567933 882 ntTSL 3 BASIC15.92■□□□□ 0.14
HOXC4P09017 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC15.92■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 62.6 ms