Protein–RNA interactions for Protein: O95476

CTDNEP1, CTD nuclear envelope phosphatase 1, humanhuman

Predictions only

Length 244 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1O95476 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
CTDNEP1O95476 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
CTDNEP1O95476 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
CTDNEP1O95476 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC19.01■□□□□ 0.63
CTDNEP1O95476 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC19.01■□□□□ 0.63
CTDNEP1O95476 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CTDNEP1O95476 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC19■□□□□ 0.63
CTDNEP1O95476 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC19■□□□□ 0.63
CTDNEP1O95476 ADAM9-206ENST00000481513 2387 ntTSL 2 BASIC19■□□□□ 0.63
CTDNEP1O95476 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC19■□□□□ 0.63
CTDNEP1O95476 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC19■□□□□ 0.63
CTDNEP1O95476 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
CTDNEP1O95476 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC19■□□□□ 0.63
CTDNEP1O95476 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CTDNEP1O95476 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC19■□□□□ 0.63
CTDNEP1O95476 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC19■□□□□ 0.63
CTDNEP1O95476 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
CTDNEP1O95476 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
CTDNEP1O95476 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC19■□□□□ 0.63
CTDNEP1O95476 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CTDNEP1O95476 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
CTDNEP1O95476 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC19■□□□□ 0.63
CTDNEP1O95476 MIR648-201ENST00000385046 94 ntBASIC19■□□□□ 0.63
CTDNEP1O95476 AL355306.1-201ENST00000415580 579 ntBASIC19■□□□□ 0.63
CTDNEP1O95476 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC19■□□□□ 0.63
CTDNEP1O95476 PRYP6-201ENST00000514804 343 ntBASIC19■□□□□ 0.63
CTDNEP1O95476 AC112191.1-201ENST00000523689 701 ntBASIC19■□□□□ 0.63
CTDNEP1O95476 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC19■□□□□ 0.63
CTDNEP1O95476 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC19■□□□□ 0.63
CTDNEP1O95476 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
CTDNEP1O95476 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC19■□□□□ 0.63
CTDNEP1O95476 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CTDNEP1O95476 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
CTDNEP1O95476 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC19■□□□□ 0.63
CTDNEP1O95476 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC19■□□□□ 0.63
CTDNEP1O95476 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC19■□□□□ 0.63
CTDNEP1O95476 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC19■□□□□ 0.63
CTDNEP1O95476 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC19■□□□□ 0.63
CTDNEP1O95476 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC19■□□□□ 0.63
CTDNEP1O95476 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC19■□□□□ 0.63
CTDNEP1O95476 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC19■□□□□ 0.63
CTDNEP1O95476 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CTDNEP1O95476 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC19■□□□□ 0.63
CTDNEP1O95476 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CTDNEP1O95476 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC19■□□□□ 0.63
CTDNEP1O95476 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC19■□□□□ 0.63
CTDNEP1O95476 BSG-215ENST00000618006 1329 ntTSL 2 BASIC19■□□□□ 0.63
CTDNEP1O95476 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CTDNEP1O95476 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CTDNEP1O95476 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
CTDNEP1O95476 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CTDNEP1O95476 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC18.99■□□□□ 0.63
CTDNEP1O95476 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC18.99■□□□□ 0.63
CTDNEP1O95476 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CTDNEP1O95476 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CTDNEP1O95476 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CTDNEP1O95476 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC18.99■□□□□ 0.63
CTDNEP1O95476 AC105917.1-201ENST00000506637 2539 ntBASIC18.99■□□□□ 0.63
CTDNEP1O95476 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC18.99■□□□□ 0.63
CTDNEP1O95476 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CTDNEP1O95476 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CTDNEP1O95476 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CTDNEP1O95476 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CTDNEP1O95476 MCCD1P2-201ENST00000423228 335 ntBASIC18.99■□□□□ 0.63
CTDNEP1O95476 KRT18P58-201ENST00000527480 1120 ntBASIC18.99■□□□□ 0.63
CTDNEP1O95476 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
CTDNEP1O95476 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC18.99■□□□□ 0.63
CTDNEP1O95476 RARRES2P8-201ENST00000566335 367 ntBASIC18.99■□□□□ 0.63
CTDNEP1O95476 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC18.99■□□□□ 0.63
CTDNEP1O95476 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC18.99■□□□□ 0.63
CTDNEP1O95476 AC073389.1-201ENST00000595595 795 ntBASIC18.99■□□□□ 0.63
CTDNEP1O95476 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
CTDNEP1O95476 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CTDNEP1O95476 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
CTDNEP1O95476 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
CTDNEP1O95476 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CTDNEP1O95476 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CTDNEP1O95476 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CTDNEP1O95476 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC18.99■□□□□ 0.63
CTDNEP1O95476 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
CTDNEP1O95476 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
CTDNEP1O95476 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
CTDNEP1O95476 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC18.99■□□□□ 0.63
CTDNEP1O95476 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
CTDNEP1O95476 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CTDNEP1O95476 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC18.98■□□□□ 0.63
CTDNEP1O95476 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC18.98■□□□□ 0.63
CTDNEP1O95476 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
CTDNEP1O95476 RALGPS1-203ENST00000373434 2466 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
CTDNEP1O95476 HLA-DQB2-231ENST00000435145 2026 ntBASIC18.98■□□□□ 0.63
CTDNEP1O95476 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC18.98■□□□□ 0.63
CTDNEP1O95476 GOLGA2P9-201ENST00000596977 1937 ntBASIC18.98■□□□□ 0.63
CTDNEP1O95476 HCG11-201ENST00000411553 5696 ntBASIC18.98■□□□□ 0.63
CTDNEP1O95476 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
CTDNEP1O95476 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC18.98■□□□□ 0.63
CTDNEP1O95476 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
CTDNEP1O95476 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
CTDNEP1O95476 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC18.98■□□□□ 0.63
CTDNEP1O95476 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CTDNEP1O95476 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 53.2 ms