Protein–RNA interactions for Protein: O00409

FOXN3, Forkhead box protein N3, humanhuman

Predicted RBP Predictions only

Length 490 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3O00409 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
FOXN3O00409 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
FOXN3O00409 BEX3-201ENST00000361298 921 ntTSL 2 BASIC17.63■□□□□ 0.41
FOXN3O00409 TEX30-205ENST00000376029 959 ntTSL 2 BASIC17.63■□□□□ 0.41
FOXN3O00409 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC17.63■□□□□ 0.41
FOXN3O00409 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC17.63■□□□□ 0.41
FOXN3O00409 HS6ST1P1-201ENST00000481504 1234 ntBASIC17.63■□□□□ 0.41
FOXN3O00409 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC17.63■□□□□ 0.41
FOXN3O00409 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC17.63■□□□□ 0.41
FOXN3O00409 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC17.63■□□□□ 0.41
FOXN3O00409 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC17.63■□□□□ 0.41
FOXN3O00409 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
FOXN3O00409 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
FOXN3O00409 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC17.63■□□□□ 0.41
FOXN3O00409 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC17.63■□□□□ 0.41
FOXN3O00409 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC17.63■□□□□ 0.41
FOXN3O00409 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC17.63■□□□□ 0.41
FOXN3O00409 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
FOXN3O00409 ADGRB2-212ENST00000527361 4919 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
FOXN3O00409 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
FOXN3O00409 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
FOXN3O00409 PAUPAR-201ENST00000630360 2965 ntBASIC17.63■□□□□ 0.41
FOXN3O00409 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
FOXN3O00409 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
FOXN3O00409 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
FOXN3O00409 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
FOXN3O00409 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC17.63■□□□□ 0.41
FOXN3O00409 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC17.63■□□□□ 0.41
FOXN3O00409 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
FOXN3O00409 SUPT20HL2-201ENST00000486479 2409 ntBASIC17.62■□□□□ 0.41
FOXN3O00409 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC17.62■□□□□ 0.41
FOXN3O00409 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.41
FOXN3O00409 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
FOXN3O00409 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
FOXN3O00409 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC17.62■□□□□ 0.41
FOXN3O00409 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
FOXN3O00409 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
FOXN3O00409 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
FOXN3O00409 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC17.62■□□□□ 0.41
FOXN3O00409 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC17.62■□□□□ 0.41
FOXN3O00409 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC17.62■□□□□ 0.41
FOXN3O00409 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.41
FOXN3O00409 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.41
FOXN3O00409 FIS1-203ENST00000442303 631 ntTSL 3 BASIC17.62■□□□□ 0.41
FOXN3O00409 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.41
FOXN3O00409 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC17.62■□□□□ 0.41
FOXN3O00409 AC074386.1-202ENST00000463561 864 ntBASIC17.62■□□□□ 0.41
FOXN3O00409 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC17.62■□□□□ 0.41
FOXN3O00409 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC17.62■□□□□ 0.41
FOXN3O00409 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC17.62■□□□□ 0.41
FOXN3O00409 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.41
FOXN3O00409 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC17.62■□□□□ 0.41
FOXN3O00409 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC17.62■□□□□ 0.41
FOXN3O00409 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC17.62■□□□□ 0.41
FOXN3O00409 AC140113.2-201ENST00000604370 208 ntBASIC17.62■□□□□ 0.41
FOXN3O00409 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC17.62■□□□□ 0.41
FOXN3O00409 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
FOXN3O00409 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
FOXN3O00409 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
FOXN3O00409 REM2-202ENST00000536884 1331 ntTSL 2 BASIC17.62■□□□□ 0.41
FOXN3O00409 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
FOXN3O00409 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
FOXN3O00409 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
FOXN3O00409 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
FOXN3O00409 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
FOXN3O00409 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
FOXN3O00409 AC016027.1-202ENST00000607927 1699 ntBASIC17.61■□□□□ 0.41
FOXN3O00409 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC17.61■□□□□ 0.41
FOXN3O00409 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
FOXN3O00409 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC17.61■□□□□ 0.41
FOXN3O00409 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
FOXN3O00409 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
FOXN3O00409 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
FOXN3O00409 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC17.61■□□□□ 0.41
FOXN3O00409 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC17.61■□□□□ 0.41
FOXN3O00409 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
FOXN3O00409 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
FOXN3O00409 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
FOXN3O00409 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
FOXN3O00409 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
FOXN3O00409 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC17.61■□□□□ 0.41
FOXN3O00409 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC17.61■□□□□ 0.41
FOXN3O00409 KRT18P3-201ENST00000451602 1288 ntBASIC17.61■□□□□ 0.41
FOXN3O00409 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
FOXN3O00409 SMN2-210ENST00000511812 867 ntTSL 2 BASIC17.61■□□□□ 0.41
FOXN3O00409 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC17.61■□□□□ 0.41
FOXN3O00409 CFL1-202ENST00000524553 860 ntTSL 2 BASIC17.61■□□□□ 0.41
FOXN3O00409 PDPK2P-202ENST00000562415 1191 ntBASIC17.61■□□□□ 0.41
FOXN3O00409 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC17.61■□□□□ 0.41
FOXN3O00409 AP002472.1-201ENST00000577490 586 ntBASIC17.61■□□□□ 0.41
FOXN3O00409 AL078644.1-201ENST00000609881 752 ntBASIC17.61■□□□□ 0.41
FOXN3O00409 AC027601.4-201ENST00000611259 610 ntBASIC17.61■□□□□ 0.41
FOXN3O00409 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
FOXN3O00409 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
FOXN3O00409 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC17.61■□□□□ 0.41
FOXN3O00409 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC17.61■□□□□ 0.41
FOXN3O00409 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
FOXN3O00409 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
FOXN3O00409 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC17.61■□□□□ 0.41
FOXN3O00409 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 27.6 ms