Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
PCDHGA1Q9Y5H4 ATXN2-AS-201ENST00000547021 485 ntTSL 2 BASIC15.78■□□□□ 0.12
PCDHGA1Q9Y5H4 MRPL52-216ENST00000557221 922 ntTSL 2 BASIC15.78■□□□□ 0.12
PCDHGA1Q9Y5H4 RPL28-206ENST00000558752 671 ntTSL 3 BASIC15.78■□□□□ 0.12
PCDHGA1Q9Y5H4 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC15.78■□□□□ 0.12
PCDHGA1Q9Y5H4 ELOF1-208ENST00000591912 899 ntTSL 5 BASIC15.78■□□□□ 0.12
PCDHGA1Q9Y5H4 AL033527.5-202ENST00000641632 1098 ntBASIC15.78■□□□□ 0.12
PCDHGA1Q9Y5H4 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
PCDHGA1Q9Y5H4 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
PCDHGA1Q9Y5H4 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC15.78■□□□□ 0.12
PCDHGA1Q9Y5H4 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
PCDHGA1Q9Y5H4 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
PCDHGA1Q9Y5H4 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC15.78■□□□□ 0.12
PCDHGA1Q9Y5H4 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
PCDHGA1Q9Y5H4 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
PCDHGA1Q9Y5H4 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
PCDHGA1Q9Y5H4 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC15.78■□□□□ 0.12
PCDHGA1Q9Y5H4 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
PCDHGA1Q9Y5H4 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC15.78■□□□□ 0.12
PCDHGA1Q9Y5H4 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
PCDHGA1Q9Y5H4 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC15.78■□□□□ 0.12
PCDHGA1Q9Y5H4 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC15.78■□□□□ 0.12
PCDHGA1Q9Y5H4 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
PCDHGA1Q9Y5H4 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC15.78■□□□□ 0.12
PCDHGA1Q9Y5H4 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
PCDHGA1Q9Y5H4 PIMREG-201ENST00000250056 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
PCDHGA1Q9Y5H4 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
PCDHGA1Q9Y5H4 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.12
PCDHGA1Q9Y5H4 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.12
PCDHGA1Q9Y5H4 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC15.77■□□□□ 0.12
PCDHGA1Q9Y5H4 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC15.77■□□□□ 0.12
PCDHGA1Q9Y5H4 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
PCDHGA1Q9Y5H4 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.12
PCDHGA1Q9Y5H4 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC15.77■□□□□ 0.12
PCDHGA1Q9Y5H4 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC15.77■□□□□ 0.12
PCDHGA1Q9Y5H4 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
PCDHGA1Q9Y5H4 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
PCDHGA1Q9Y5H4 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC15.77■□□□□ 0.12
PCDHGA1Q9Y5H4 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
PCDHGA1Q9Y5H4 AC006277.1-201ENST00000624348 1610 ntBASIC15.77■□□□□ 0.12
PCDHGA1Q9Y5H4 IFITM3-201ENST00000399808 808 ntAPPRIS P2 TSL 1 (best) BASIC15.77■□□□□ 0.12
PCDHGA1Q9Y5H4 PGF-202ENST00000405431 666 ntTSL 5 BASIC15.77■□□□□ 0.12
PCDHGA1Q9Y5H4 RAB34-206ENST00000415040 1293 ntTSL 2 BASIC15.77■□□□□ 0.12
PCDHGA1Q9Y5H4 VMO1-203ENST00000416307 712 ntTSL 2 BASIC15.77■□□□□ 0.12
PCDHGA1Q9Y5H4 RN7SL837P-201ENST00000463010 287 ntBASIC15.77■□□□□ 0.12
PCDHGA1Q9Y5H4 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC15.77■□□□□ 0.12
PCDHGA1Q9Y5H4 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
PCDHGA1Q9Y5H4 CHMP2B-205ENST00000494980 1175 ntTSL 3 BASIC15.77■□□□□ 0.12
PCDHGA1Q9Y5H4 TPRX2P-201ENST00000535362 881 ntBASIC15.77■□□□□ 0.12
PCDHGA1Q9Y5H4 AC004790.1-201ENST00000612686 536 ntBASIC15.77■□□□□ 0.12
PCDHGA1Q9Y5H4 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
PCDHGA1Q9Y5H4 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
PCDHGA1Q9Y5H4 XKR7-201ENST00000562532 7844 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
PCDHGA1Q9Y5H4 CYB561D2-202ENST00000418577 1533 ntAPPRIS P1 TSL 2 BASIC15.77■□□□□ 0.11
PCDHGA1Q9Y5H4 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
PCDHGA1Q9Y5H4 MYH14-203ENST00000425460 6811 ntAPPRIS P3 TSL 5 BASIC15.77■□□□□ 0.11
PCDHGA1Q9Y5H4 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC15.77■□□□□ 0.11
PCDHGA1Q9Y5H4 KRT8P39-201ENST00000396270 1433 ntBASIC15.77■□□□□ 0.11
PCDHGA1Q9Y5H4 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC15.77■□□□□ 0.11
PCDHGA1Q9Y5H4 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
PCDHGA1Q9Y5H4 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
PCDHGA1Q9Y5H4 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC15.76■□□□□ 0.11
PCDHGA1Q9Y5H4 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
PCDHGA1Q9Y5H4 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
PCDHGA1Q9Y5H4 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
PCDHGA1Q9Y5H4 TPR-209ENST00000613151 2478 ntTSL 5 BASIC15.76■□□□□ 0.11
PCDHGA1Q9Y5H4 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
PCDHGA1Q9Y5H4 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
PCDHGA1Q9Y5H4 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
PCDHGA1Q9Y5H4 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
PCDHGA1Q9Y5H4 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC15.76■□□□□ 0.11
PCDHGA1Q9Y5H4 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
PCDHGA1Q9Y5H4 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
PCDHGA1Q9Y5H4 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC15.76■□□□□ 0.11
PCDHGA1Q9Y5H4 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC15.76■□□□□ 0.11
PCDHGA1Q9Y5H4 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC15.76■□□□□ 0.11
PCDHGA1Q9Y5H4 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
PCDHGA1Q9Y5H4 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC15.76■□□□□ 0.11
PCDHGA1Q9Y5H4 SCAND1-201ENST00000305978 902 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
PCDHGA1Q9Y5H4 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
PCDHGA1Q9Y5H4 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
PCDHGA1Q9Y5H4 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC15.76■□□□□ 0.11
PCDHGA1Q9Y5H4 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC15.76■□□□□ 0.11
PCDHGA1Q9Y5H4 SZT2-AS1-201ENST00000396885 699 ntTSL 3 BASIC15.76■□□□□ 0.11
PCDHGA1Q9Y5H4 MYCLP2-201ENST00000449268 967 ntBASIC15.76■□□□□ 0.11
PCDHGA1Q9Y5H4 FUZ-207ENST00000526575 482 ntTSL 4 BASIC15.76■□□□□ 0.11
PCDHGA1Q9Y5H4 TSPAN11-204ENST00000546076 1058 ntAPPRIS P1 TSL 2 BASIC15.76■□□□□ 0.11
PCDHGA1Q9Y5H4 AP005482.1-201ENST00000563722 1273 ntBASIC15.76■□□□□ 0.11
PCDHGA1Q9Y5H4 AC079336.1-201ENST00000583156 420 ntTSL 3 BASIC15.76■□□□□ 0.11
PCDHGA1Q9Y5H4 AP001033.1-201ENST00000584509 466 ntTSL 3 BASIC15.76■□□□□ 0.11
PCDHGA1Q9Y5H4 AC111170.2-201ENST00000585369 768 ntTSL 3 BASIC15.76■□□□□ 0.11
PCDHGA1Q9Y5H4 PIH1D1-209ENST00000596049 992 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
PCDHGA1Q9Y5H4 NOP16-209ENST00000618911 1087 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
PCDHGA1Q9Y5H4 POMK-203ENST00000614426 1527 ntAPPRIS P1 TSL 4 BASIC15.76■□□□□ 0.11
PCDHGA1Q9Y5H4 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC15.76■□□□□ 0.11
PCDHGA1Q9Y5H4 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC15.76■□□□□ 0.11
PCDHGA1Q9Y5H4 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
PCDHGA1Q9Y5H4 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC15.76■□□□□ 0.11
PCDHGA1Q9Y5H4 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC15.76■□□□□ 0.11
PCDHGA1Q9Y5H4 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 54.6 ms