Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
VPS9D1Q9Y2B5 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
VPS9D1Q9Y2B5 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC16.44■□□□□ 0.22
VPS9D1Q9Y2B5 WDR81-202ENST00000409644 6733 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
VPS9D1Q9Y2B5 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
VPS9D1Q9Y2B5 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC16.44■□□□□ 0.22
VPS9D1Q9Y2B5 SHISA6-203ENST00000432116 7518 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
VPS9D1Q9Y2B5 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
VPS9D1Q9Y2B5 NUCKS1-201ENST00000367142 6496 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
VPS9D1Q9Y2B5 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC16.44■□□□□ 0.22
VPS9D1Q9Y2B5 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
VPS9D1Q9Y2B5 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
VPS9D1Q9Y2B5 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
VPS9D1Q9Y2B5 TPCN1-201ENST00000335509 5274 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
VPS9D1Q9Y2B5 HELZ2-202ENST00000427522 7827 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
VPS9D1Q9Y2B5 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC16.44■□□□□ 0.22
VPS9D1Q9Y2B5 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
VPS9D1Q9Y2B5 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
VPS9D1Q9Y2B5 TTBK1-201ENST00000259750 6932 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
VPS9D1Q9Y2B5 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
VPS9D1Q9Y2B5 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
VPS9D1Q9Y2B5 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC16.43■□□□□ 0.22
VPS9D1Q9Y2B5 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC16.43■□□□□ 0.22
VPS9D1Q9Y2B5 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC16.43■□□□□ 0.22
VPS9D1Q9Y2B5 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
VPS9D1Q9Y2B5 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
VPS9D1Q9Y2B5 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
VPS9D1Q9Y2B5 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC16.43■□□□□ 0.22
VPS9D1Q9Y2B5 ZNF259P1-201ENST00000407656 1365 ntBASIC16.43■□□□□ 0.22
VPS9D1Q9Y2B5 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC16.43■□□□□ 0.22
VPS9D1Q9Y2B5 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
VPS9D1Q9Y2B5 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC16.43■□□□□ 0.22
VPS9D1Q9Y2B5 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC16.43■□□□□ 0.22
VPS9D1Q9Y2B5 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
VPS9D1Q9Y2B5 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
VPS9D1Q9Y2B5 CCL8-201ENST00000394620 1261 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
VPS9D1Q9Y2B5 DDT-204ENST00000404092 805 ntTSL 3 BASIC16.43■□□□□ 0.22
VPS9D1Q9Y2B5 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC16.43■□□□□ 0.22
VPS9D1Q9Y2B5 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
VPS9D1Q9Y2B5 VMO1-203ENST00000416307 712 ntTSL 2 BASIC16.43■□□□□ 0.22
VPS9D1Q9Y2B5 FALEC-201ENST00000416894 566 ntTSL 3 BASIC16.43■□□□□ 0.22
VPS9D1Q9Y2B5 LINC01014-203ENST00000455307 548 ntTSL 2 BASIC16.43■□□□□ 0.22
VPS9D1Q9Y2B5 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
VPS9D1Q9Y2B5 AC009269.5-201ENST00000557800 755 ntTSL 3 BASIC16.43■□□□□ 0.22
VPS9D1Q9Y2B5 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
VPS9D1Q9Y2B5 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC16.43■□□□□ 0.22
VPS9D1Q9Y2B5 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
VPS9D1Q9Y2B5 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC16.43■□□□□ 0.22
VPS9D1Q9Y2B5 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
VPS9D1Q9Y2B5 C4A-243ENST00000428956 5460 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
VPS9D1Q9Y2B5 C4B-202ENST00000435363 5460 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
VPS9D1Q9Y2B5 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
VPS9D1Q9Y2B5 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC16.43■□□□□ 0.22
VPS9D1Q9Y2B5 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
VPS9D1Q9Y2B5 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
VPS9D1Q9Y2B5 CYP2U1-201ENST00000332884 4944 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
VPS9D1Q9Y2B5 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
VPS9D1Q9Y2B5 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC16.43■□□□□ 0.22
VPS9D1Q9Y2B5 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
VPS9D1Q9Y2B5 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC16.43■□□□□ 0.22
VPS9D1Q9Y2B5 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC16.43■□□□□ 0.22
VPS9D1Q9Y2B5 ZNF687-201ENST00000324048 5378 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
VPS9D1Q9Y2B5 AC006449.6-201ENST00000612330 2296 ntBASIC16.43■□□□□ 0.22
VPS9D1Q9Y2B5 GFRA2-208ENST00000524240 4921 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
VPS9D1Q9Y2B5 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
VPS9D1Q9Y2B5 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC16.43■□□□□ 0.22
VPS9D1Q9Y2B5 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC16.42■□□□□ 0.22
VPS9D1Q9Y2B5 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
VPS9D1Q9Y2B5 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
VPS9D1Q9Y2B5 SLC2A14-202ENST00000396589 2335 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
VPS9D1Q9Y2B5 MGA-212ENST00000619521 1496 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
VPS9D1Q9Y2B5 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
VPS9D1Q9Y2B5 AC005052.1-201ENST00000625181 2492 ntBASIC16.42■□□□□ 0.22
VPS9D1Q9Y2B5 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
VPS9D1Q9Y2B5 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC16.42■□□□□ 0.22
VPS9D1Q9Y2B5 SHISA6-202ENST00000409168 7262 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
VPS9D1Q9Y2B5 BANP-204ENST00000393208 2283 ntTSL 2 BASIC16.42■□□□□ 0.22
VPS9D1Q9Y2B5 AC026691.1-201ENST00000602502 2017 ntBASIC16.42■□□□□ 0.22
VPS9D1Q9Y2B5 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
VPS9D1Q9Y2B5 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
VPS9D1Q9Y2B5 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
VPS9D1Q9Y2B5 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
VPS9D1Q9Y2B5 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
VPS9D1Q9Y2B5 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC16.42■□□□□ 0.22
VPS9D1Q9Y2B5 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC16.42■□□□□ 0.22
VPS9D1Q9Y2B5 RPL13AP23-201ENST00000480739 586 ntBASIC16.42■□□□□ 0.22
VPS9D1Q9Y2B5 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC16.42■□□□□ 0.22
VPS9D1Q9Y2B5 AC034105.1-201ENST00000563488 319 ntBASIC16.42■□□□□ 0.22
VPS9D1Q9Y2B5 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
VPS9D1Q9Y2B5 AC064836.3-201ENST00000607928 673 ntBASIC16.42■□□□□ 0.22
VPS9D1Q9Y2B5 MED16-214ENST00000617672 554 ntTSL 5 BASIC16.42■□□□□ 0.22
VPS9D1Q9Y2B5 AQP6-205ENST00000618286 829 ntTSL 5 BASIC16.42■□□□□ 0.22
VPS9D1Q9Y2B5 CAND2-206ENST00000626378 333 ntTSL 5 BASIC16.42■□□□□ 0.22
VPS9D1Q9Y2B5 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC16.42■□□□□ 0.22
VPS9D1Q9Y2B5 AL662844.4-201ENST00000606367 2838 ntBASIC16.42■□□□□ 0.22
VPS9D1Q9Y2B5 CCNY-202ENST00000339497 4630 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
VPS9D1Q9Y2B5 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC16.42■□□□□ 0.22
VPS9D1Q9Y2B5 VAV3-210ENST00000527011 4510 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
VPS9D1Q9Y2B5 SHTN1-201ENST00000260777 5308 ntAPPRIS ALT2 TSL 2 BASIC16.42■□□□□ 0.22
VPS9D1Q9Y2B5 DNAJC10-210ENST00000616986 5783 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 46.5 ms