Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC13.38□□□□□ -0.27
FOXA2Q9Y261 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC13.38□□□□□ -0.27
FOXA2Q9Y261 LINC01144-201ENST00000626198 1710 ntBASIC13.38□□□□□ -0.27
FOXA2Q9Y261 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC13.38□□□□□ -0.27
FOXA2Q9Y261 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
FOXA2Q9Y261 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
FOXA2Q9Y261 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
FOXA2Q9Y261 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC13.38□□□□□ -0.27
FOXA2Q9Y261 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC13.38□□□□□ -0.27
FOXA2Q9Y261 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC13.38□□□□□ -0.27
FOXA2Q9Y261 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
FOXA2Q9Y261 FRMPD4-201ENST00000380682 8465 ntAPPRIS P2 TSL 1 (best) BASIC13.38□□□□□ -0.27
FOXA2Q9Y261 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
FOXA2Q9Y261 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC13.38□□□□□ -0.27
FOXA2Q9Y261 PCGF3-213ENST00000620529 1899 ntBASIC13.38□□□□□ -0.27
FOXA2Q9Y261 IL9RP2-201ENST00000423948 1312 ntBASIC13.38□□□□□ -0.27
FOXA2Q9Y261 GPAA1P2-202ENST00000606848 1787 ntBASIC13.37□□□□□ -0.27
FOXA2Q9Y261 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
FOXA2Q9Y261 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
FOXA2Q9Y261 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
FOXA2Q9Y261 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
FOXA2Q9Y261 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
FOXA2Q9Y261 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC13.37□□□□□ -0.27
FOXA2Q9Y261 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC13.37□□□□□ -0.27
FOXA2Q9Y261 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
FOXA2Q9Y261 DYM-201ENST00000269445 5049 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
FOXA2Q9Y261 EVPL-201ENST00000301607 6614 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
FOXA2Q9Y261 PTPN13-204ENST00000436978 8573 ntAPPRIS P4 TSL 5 BASIC13.37□□□□□ -0.27
FOXA2Q9Y261 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC13.37□□□□□ -0.27
FOXA2Q9Y261 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC13.37□□□□□ -0.27
FOXA2Q9Y261 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC13.37□□□□□ -0.27
FOXA2Q9Y261 CARD11-203ENST00000396946 4366 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
FOXA2Q9Y261 CTIF-201ENST00000256413 5750 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
FOXA2Q9Y261 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
FOXA2Q9Y261 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
FOXA2Q9Y261 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC13.37□□□□□ -0.27
FOXA2Q9Y261 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC13.37□□□□□ -0.27
FOXA2Q9Y261 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
FOXA2Q9Y261 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC13.37□□□□□ -0.27
FOXA2Q9Y261 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC13.37□□□□□ -0.27
FOXA2Q9Y261 UNC93B6-202ENST00000528242 690 ntBASIC13.37□□□□□ -0.27
FOXA2Q9Y261 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC13.37□□□□□ -0.27
FOXA2Q9Y261 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC13.37□□□□□ -0.27
FOXA2Q9Y261 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC13.37□□□□□ -0.27
FOXA2Q9Y261 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC13.37□□□□□ -0.27
FOXA2Q9Y261 CYP2A7P1-201ENST00000595391 815 ntBASIC13.37□□□□□ -0.27
FOXA2Q9Y261 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
FOXA2Q9Y261 BX640515.1-201ENST00000617215 977 ntBASIC13.37□□□□□ -0.27
FOXA2Q9Y261 AP001350.2-201ENST00000625104 1094 ntBASIC13.37□□□□□ -0.27
FOXA2Q9Y261 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC13.37□□□□□ -0.27
FOXA2Q9Y261 GCLM-201ENST00000370238 4857 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
FOXA2Q9Y261 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC13.37□□□□□ -0.27
FOXA2Q9Y261 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
FOXA2Q9Y261 ZFP41-201ENST00000330701 4797 ntAPPRIS P1 TSL 2 BASIC13.37□□□□□ -0.27
FOXA2Q9Y261 LRP10-201ENST00000359591 6886 ntAPPRIS P2 TSL 1 (best) BASIC13.37□□□□□ -0.27
FOXA2Q9Y261 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
FOXA2Q9Y261 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
FOXA2Q9Y261 HARS-203ENST00000431330 1774 ntTSL 2 BASIC13.37□□□□□ -0.27
FOXA2Q9Y261 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC13.37□□□□□ -0.27
FOXA2Q9Y261 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC13.37□□□□□ -0.27
FOXA2Q9Y261 AC105917.1-201ENST00000506637 2539 ntBASIC13.37□□□□□ -0.27
FOXA2Q9Y261 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC13.37□□□□□ -0.27
FOXA2Q9Y261 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC13.37□□□□□ -0.27
FOXA2Q9Y261 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC13.37□□□□□ -0.27
FOXA2Q9Y261 SLC30A5-202ENST00000396591 4360 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
FOXA2Q9Y261 SP100-205ENST00000409824 1802 ntTSL 5 BASIC13.36□□□□□ -0.27
FOXA2Q9Y261 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
FOXA2Q9Y261 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
FOXA2Q9Y261 AL353732.1-201ENST00000569618 1459 ntBASIC13.36□□□□□ -0.27
FOXA2Q9Y261 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC13.36□□□□□ -0.27
FOXA2Q9Y261 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
FOXA2Q9Y261 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC13.36□□□□□ -0.27
FOXA2Q9Y261 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
FOXA2Q9Y261 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
FOXA2Q9Y261 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
FOXA2Q9Y261 WASHC2C-202ENST00000359860 4471 ntAPPRIS ALT2 TSL 5 BASIC13.36□□□□□ -0.27
FOXA2Q9Y261 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
FOXA2Q9Y261 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
FOXA2Q9Y261 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC13.36□□□□□ -0.27
FOXA2Q9Y261 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC13.36□□□□□ -0.27
FOXA2Q9Y261 AL603832.2-201ENST00000566195 2125 ntBASIC13.36□□□□□ -0.27
FOXA2Q9Y261 ZNF134-201ENST00000396161 4914 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
FOXA2Q9Y261 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC13.36□□□□□ -0.27
FOXA2Q9Y261 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC13.36□□□□□ -0.27
FOXA2Q9Y261 CD63-204ENST00000546939 779 ntTSL 3 BASIC13.36□□□□□ -0.27
FOXA2Q9Y261 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC13.36□□□□□ -0.27
FOXA2Q9Y261 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC13.36□□□□□ -0.27
FOXA2Q9Y261 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC13.36□□□□□ -0.27
FOXA2Q9Y261 Z83851.2-201ENST00000609564 659 ntBASIC13.36□□□□□ -0.27
FOXA2Q9Y261 AC010654.1-201ENST00000615722 808 ntBASIC13.36□□□□□ -0.27
FOXA2Q9Y261 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
FOXA2Q9Y261 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC13.36□□□□□ -0.27
FOXA2Q9Y261 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC13.36□□□□□ -0.27
FOXA2Q9Y261 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
FOXA2Q9Y261 SHISA9-203ENST00000558583 6724 ntAPPRIS P4 TSL 5 BASIC13.36□□□□□ -0.27
FOXA2Q9Y261 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC13.36□□□□□ -0.27
FOXA2Q9Y261 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC13.36□□□□□ -0.27
FOXA2Q9Y261 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
FOXA2Q9Y261 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC13.36□□□□□ -0.27
FOXA2Q9Y261 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 32 ms