Protein–RNA interactions for Protein: Q9UPT8

ZC3H4, Zinc finger CCCH domain-containing protein 4, humanhuman

Known RBP Predictions only

Length 1,303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZC3H4Q9UPT8 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
ZC3H4Q9UPT8 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
ZC3H4Q9UPT8 KRTAP19-3-201ENST00000334063 522 ntAPPRIS P1 BASIC19.76■□□□□ 0.75
ZC3H4Q9UPT8 PRDX5-203ENST00000352435 596 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
ZC3H4Q9UPT8 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC19.76■□□□□ 0.75
ZC3H4Q9UPT8 VAMP1-203ENST00000400911 1068 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
ZC3H4Q9UPT8 VMO1-203ENST00000416307 712 ntTSL 2 BASIC19.76■□□□□ 0.75
ZC3H4Q9UPT8 DRGX-202ENST00000434016 955 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
ZC3H4Q9UPT8 AC116456.1-201ENST00000526646 815 ntTSL 3 BASIC19.76■□□□□ 0.75
ZC3H4Q9UPT8 TDH-203ENST00000531764 1110 ntBASIC19.76■□□□□ 0.75
ZC3H4Q9UPT8 TSR1-204ENST00000576112 1290 ntTSL 5 BASIC19.76■□□□□ 0.75
ZC3H4Q9UPT8 AC024619.2-201ENST00000581964 517 ntTSL 5 BASIC19.76■□□□□ 0.75
ZC3H4Q9UPT8 AC010328.2-201ENST00000597698 1111 ntBASIC19.76■□□□□ 0.75
ZC3H4Q9UPT8 HIST1H2BO-201ENST00000616182 381 ntAPPRIS P1 BASIC19.76■□□□□ 0.75
ZC3H4Q9UPT8 MAPK14-204ENST00000468133 1376 ntTSL 2 BASIC19.76■□□□□ 0.75
ZC3H4Q9UPT8 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC19.75■□□□□ 0.75
ZC3H4Q9UPT8 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
ZC3H4Q9UPT8 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
ZC3H4Q9UPT8 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC19.75■□□□□ 0.75
ZC3H4Q9UPT8 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
ZC3H4Q9UPT8 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
ZC3H4Q9UPT8 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC19.75■□□□□ 0.75
ZC3H4Q9UPT8 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
ZC3H4Q9UPT8 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC19.75■□□□□ 0.75
ZC3H4Q9UPT8 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC19.75■□□□□ 0.75
ZC3H4Q9UPT8 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
ZC3H4Q9UPT8 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
ZC3H4Q9UPT8 MPPE1-201ENST00000309976 1636 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
ZC3H4Q9UPT8 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
ZC3H4Q9UPT8 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
ZC3H4Q9UPT8 ECSIT-209ENST00000591104 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
ZC3H4Q9UPT8 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC19.75■□□□□ 0.75
ZC3H4Q9UPT8 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
ZC3H4Q9UPT8 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC19.75■□□□□ 0.75
ZC3H4Q9UPT8 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
ZC3H4Q9UPT8 ZBTB12BP-201ENST00000314232 1122 ntBASIC19.75■□□□□ 0.75
ZC3H4Q9UPT8 TREML1-201ENST00000373127 1194 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
ZC3H4Q9UPT8 PPP1R14B-202ENST00000392210 600 ntTSL 3 BASIC19.75■□□□□ 0.75
ZC3H4Q9UPT8 GPR17-202ENST00000393018 1177 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
ZC3H4Q9UPT8 PFDN6-204ENST00000395131 884 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
ZC3H4Q9UPT8 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC19.75■□□□□ 0.75
ZC3H4Q9UPT8 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC19.75■□□□□ 0.75
ZC3H4Q9UPT8 RN7SL399P-201ENST00000471648 279 ntBASIC19.75■□□□□ 0.75
ZC3H4Q9UPT8 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC19.75■□□□□ 0.75
ZC3H4Q9UPT8 SNHG9-201ENST00000531523 275 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
ZC3H4Q9UPT8 DUX4L45-201ENST00000566406 1057 ntBASIC19.75■□□□□ 0.75
ZC3H4Q9UPT8 TBC1D16-203ENST00000570373 961 ntTSL 5 BASIC19.75■□□□□ 0.75
ZC3H4Q9UPT8 AC036164.1-201ENST00000570544 333 ntBASIC19.75■□□□□ 0.75
ZC3H4Q9UPT8 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC19.75■□□□□ 0.75
ZC3H4Q9UPT8 AC008758.5-201ENST00000595562 617 ntAPPRIS P1 TSL 4 BASIC19.75■□□□□ 0.75
ZC3H4Q9UPT8 ZNF83-215ENST00000600714 810 ntTSL 3 BASIC19.75■□□□□ 0.75
ZC3H4Q9UPT8 AC243967.2-201ENST00000601409 567 ntTSL 4 BASIC19.75■□□□□ 0.75
ZC3H4Q9UPT8 AC133539.2-201ENST00000604757 467 ntBASIC19.75■□□□□ 0.75
ZC3H4Q9UPT8 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC19.74■□□□□ 0.75
ZC3H4Q9UPT8 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC19.74■□□□□ 0.75
ZC3H4Q9UPT8 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC19.74■□□□□ 0.75
ZC3H4Q9UPT8 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC19.74■□□□□ 0.75
ZC3H4Q9UPT8 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
ZC3H4Q9UPT8 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
ZC3H4Q9UPT8 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
ZC3H4Q9UPT8 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC19.74■□□□□ 0.75
ZC3H4Q9UPT8 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC19.74■□□□□ 0.75
ZC3H4Q9UPT8 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
ZC3H4Q9UPT8 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
ZC3H4Q9UPT8 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
ZC3H4Q9UPT8 TEX13B-201ENST00000302917 1248 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
ZC3H4Q9UPT8 PPDPF-201ENST00000370177 627 ntTSL 2 BASIC19.74■□□□□ 0.75
ZC3H4Q9UPT8 DPM2-202ENST00000373110 738 ntTSL 2 BASIC19.74■□□□□ 0.75
ZC3H4Q9UPT8 C1orf159-201ENST00000379319 1097 ntAPPRIS P3 TSL 5 BASIC19.74■□□□□ 0.75
ZC3H4Q9UPT8 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC19.74■□□□□ 0.75
ZC3H4Q9UPT8 LINC01806-201ENST00000436506 765 ntTSL 2 BASIC19.74■□□□□ 0.75
ZC3H4Q9UPT8 APOPT1-207ENST00000477116 906 ntTSL 3 BASIC19.74■□□□□ 0.75
ZC3H4Q9UPT8 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
ZC3H4Q9UPT8 AC015967.2-201ENST00000624092 234 ntBASIC19.74■□□□□ 0.75
ZC3H4Q9UPT8 AC006435.4-201ENST00000625037 234 ntBASIC19.74■□□□□ 0.75
ZC3H4Q9UPT8 KISS1-202ENST00000625357 435 ntAPPRIS ALT2 TSL 5 BASIC19.74■□□□□ 0.75
ZC3H4Q9UPT8 AL356737.1-201ENST00000634391 234 ntBASIC19.74■□□□□ 0.75
ZC3H4Q9UPT8 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
ZC3H4Q9UPT8 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
ZC3H4Q9UPT8 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
ZC3H4Q9UPT8 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC19.73■□□□□ 0.75
ZC3H4Q9UPT8 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC19.73■□□□□ 0.75
ZC3H4Q9UPT8 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
ZC3H4Q9UPT8 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
ZC3H4Q9UPT8 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC19.73■□□□□ 0.75
ZC3H4Q9UPT8 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
ZC3H4Q9UPT8 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
ZC3H4Q9UPT8 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC19.73■□□□□ 0.75
ZC3H4Q9UPT8 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC19.73■□□□□ 0.75
ZC3H4Q9UPT8 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC19.73■□□□□ 0.75
ZC3H4Q9UPT8 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
ZC3H4Q9UPT8 HNRNPA1P48-201ENST00000562726 1377 ntBASIC19.73■□□□□ 0.75
ZC3H4Q9UPT8 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC19.73■□□□□ 0.75
ZC3H4Q9UPT8 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC19.73■□□□□ 0.75
ZC3H4Q9UPT8 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC19.73■□□□□ 0.75
ZC3H4Q9UPT8 GTF2H2C-215ENST00000514162 610 ntTSL 5 BASIC19.73■□□□□ 0.75
ZC3H4Q9UPT8 AC018653.3-202ENST00000538062 735 ntTSL 3 BASIC19.73■□□□□ 0.75
ZC3H4Q9UPT8 RIT1-205ENST00000539040 919 ntTSL 2 BASIC19.73■□□□□ 0.75
ZC3H4Q9UPT8 AL365330.1-201ENST00000607459 531 ntBASIC19.73■□□□□ 0.75
ZC3H4Q9UPT8 C9orf50-202ENST00000619117 796 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 29.9 ms