Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC31■■■□□ 2.55
SHROOM4Q9ULL8 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC31■■■□□ 2.55
SHROOM4Q9ULL8 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC31■■■□□ 2.55
SHROOM4Q9ULL8 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC31■■■□□ 2.55
SHROOM4Q9ULL8 PHACTR1-202ENST00000379329 707 ntTSL 2 BASIC31■■■□□ 2.55
SHROOM4Q9ULL8 Z82214.2-201ENST00000420269 531 ntTSL 4 BASIC31■■■□□ 2.55
SHROOM4Q9ULL8 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC31■■■□□ 2.55
SHROOM4Q9ULL8 SERBP1P3-201ENST00000459980 809 ntBASIC31■■■□□ 2.55
SHROOM4Q9ULL8 TMEM176A-202ENST00000461345 635 ntAPPRIS ALT2 TSL 5 BASIC31■■■□□ 2.55
SHROOM4Q9ULL8 RNA5SP410-201ENST00000516285 106 ntBASIC31■■■□□ 2.55
SHROOM4Q9ULL8 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC31■■■□□ 2.55
SHROOM4Q9ULL8 C12orf57-206ENST00000544681 980 ntTSL 2 BASIC31■■■□□ 2.55
SHROOM4Q9ULL8 C12orf49-204ENST00000548356 923 ntTSL 2 BASIC31■■■□□ 2.55
SHROOM4Q9ULL8 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC31■■■□□ 2.55
SHROOM4Q9ULL8 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC31■■■□□ 2.55
SHROOM4Q9ULL8 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC31■■■□□ 2.55
SHROOM4Q9ULL8 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC31■■■□□ 2.55
SHROOM4Q9ULL8 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC31■■■□□ 2.55
SHROOM4Q9ULL8 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC30.99■■■□□ 2.55
SHROOM4Q9ULL8 AMT-206ENST00000458307 1860 ntTSL 2 BASIC30.99■■■□□ 2.55
SHROOM4Q9ULL8 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC30.99■■■□□ 2.55
SHROOM4Q9ULL8 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC30.99■■■□□ 2.55
SHROOM4Q9ULL8 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC30.99■■■□□ 2.55
SHROOM4Q9ULL8 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC30.99■■■□□ 2.55
SHROOM4Q9ULL8 TRMT112-201ENST00000308774 561 ntAPPRIS ALT1 TSL 2 BASIC30.99■■■□□ 2.55
SHROOM4Q9ULL8 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC30.99■■■□□ 2.55
SHROOM4Q9ULL8 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC30.99■■■□□ 2.55
SHROOM4Q9ULL8 RAB35-202ENST00000534951 939 ntTSL 2 BASIC30.99■■■□□ 2.55
SHROOM4Q9ULL8 RPS15-212ENST00000593052 629 ntTSL 2 BASIC30.99■■■□□ 2.55
SHROOM4Q9ULL8 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC30.99■■■□□ 2.55
SHROOM4Q9ULL8 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC30.99■■■□□ 2.55
SHROOM4Q9ULL8 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC30.99■■■□□ 2.55
SHROOM4Q9ULL8 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC30.99■■■□□ 2.55
SHROOM4Q9ULL8 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC30.99■■■□□ 2.55
SHROOM4Q9ULL8 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC30.98■■■□□ 2.55
SHROOM4Q9ULL8 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC30.98■■■□□ 2.55
SHROOM4Q9ULL8 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC30.98■■■□□ 2.55
SHROOM4Q9ULL8 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC30.98■■■□□ 2.55
SHROOM4Q9ULL8 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC30.98■■■□□ 2.55
SHROOM4Q9ULL8 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC30.98■■■□□ 2.55
SHROOM4Q9ULL8 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC30.98■■■□□ 2.55
SHROOM4Q9ULL8 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC30.98■■■□□ 2.55
SHROOM4Q9ULL8 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC30.98■■■□□ 2.55
SHROOM4Q9ULL8 CD81-201ENST00000263645 1520 ntAPPRIS P1 TSL 1 (best) BASIC30.98■■■□□ 2.55
SHROOM4Q9ULL8 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC30.98■■■□□ 2.55
SHROOM4Q9ULL8 RHOA-206ENST00000454011 889 ntTSL 2 BASIC30.98■■■□□ 2.55
SHROOM4Q9ULL8 C9orf41-AS1-201ENST00000455609 719 ntTSL 1 (best) BASIC30.98■■■□□ 2.55
SHROOM4Q9ULL8 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC30.98■■■□□ 2.55
SHROOM4Q9ULL8 AP001033.1-201ENST00000584509 466 ntTSL 3 BASIC30.98■■■□□ 2.55
SHROOM4Q9ULL8 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC30.98■■■□□ 2.55
SHROOM4Q9ULL8 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC30.98■■■□□ 2.55
SHROOM4Q9ULL8 UBALD1-205ENST00000590891 2641 ntBASIC30.98■■■□□ 2.55
SHROOM4Q9ULL8 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC30.97■■■□□ 2.55
SHROOM4Q9ULL8 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC30.97■■■□□ 2.55
SHROOM4Q9ULL8 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC30.97■■■□□ 2.55
SHROOM4Q9ULL8 RPS19-201ENST00000221975 500 ntTSL 3 BASIC30.97■■■□□ 2.55
SHROOM4Q9ULL8 NSL1-201ENST00000366976 722 ntTSL 2 BASIC30.97■■■□□ 2.55
SHROOM4Q9ULL8 AC092337.1-201ENST00000568699 1129 ntBASIC30.97■■■□□ 2.55
SHROOM4Q9ULL8 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC30.97■■■□□ 2.55
SHROOM4Q9ULL8 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC30.97■■■□□ 2.55
SHROOM4Q9ULL8 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC30.97■■■□□ 2.55
SHROOM4Q9ULL8 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC30.97■■■□□ 2.55
SHROOM4Q9ULL8 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC30.97■■■□□ 2.55
SHROOM4Q9ULL8 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC30.97■■■□□ 2.55
SHROOM4Q9ULL8 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC30.97■■■□□ 2.55
SHROOM4Q9ULL8 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC30.97■■■□□ 2.55
SHROOM4Q9ULL8 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC30.97■■■□□ 2.55
SHROOM4Q9ULL8 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC30.97■■■□□ 2.55
SHROOM4Q9ULL8 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC30.97■■■□□ 2.55
SHROOM4Q9ULL8 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC30.97■■■□□ 2.55
SHROOM4Q9ULL8 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC30.97■■■□□ 2.55
SHROOM4Q9ULL8 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC30.96■■■□□ 2.55
SHROOM4Q9ULL8 RAB34-206ENST00000415040 1293 ntTSL 2 BASIC30.96■■■□□ 2.55
SHROOM4Q9ULL8 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC30.96■■■□□ 2.55
SHROOM4Q9ULL8 FLJ27354-203ENST00000526694 851 ntTSL 2 BASIC30.96■■■□□ 2.55
SHROOM4Q9ULL8 LINC00207-204ENST00000605505 666 ntTSL 1 (best) BASIC30.96■■■□□ 2.55
SHROOM4Q9ULL8 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC30.96■■■□□ 2.55
SHROOM4Q9ULL8 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC30.96■■■□□ 2.55
SHROOM4Q9ULL8 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC30.96■■■□□ 2.55
SHROOM4Q9ULL8 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC30.96■■■□□ 2.55
SHROOM4Q9ULL8 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC30.96■■■□□ 2.55
SHROOM4Q9ULL8 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC30.96■■■□□ 2.55
SHROOM4Q9ULL8 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC30.96■■■□□ 2.55
SHROOM4Q9ULL8 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC30.96■■■□□ 2.55
SHROOM4Q9ULL8 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC30.96■■■□□ 2.55
SHROOM4Q9ULL8 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC30.96■■■□□ 2.55
SHROOM4Q9ULL8 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC30.96■■■□□ 2.55
SHROOM4Q9ULL8 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC30.96■■■□□ 2.55
SHROOM4Q9ULL8 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC30.95■■■□□ 2.55
SHROOM4Q9ULL8 RBM39-205ENST00000397370 612 ntTSL 2 BASIC30.95■■■□□ 2.55
SHROOM4Q9ULL8 TMEM225B-203ENST00000453227 1041 ntAPPRIS P1 TSL 5 BASIC30.95■■■□□ 2.55
SHROOM4Q9ULL8 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC30.95■■■□□ 2.55
SHROOM4Q9ULL8 AC123567.1-201ENST00000548294 1261 ntBASIC30.95■■■□□ 2.55
SHROOM4Q9ULL8 C19orf53-206ENST00000593274 491 ntTSL 2 BASIC30.95■■■□□ 2.55
SHROOM4Q9ULL8 PDCD6-212ENST00000614778 1050 ntTSL 2 BASIC30.95■■■□□ 2.55
SHROOM4Q9ULL8 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC30.95■■■□□ 2.55
SHROOM4Q9ULL8 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC30.95■■■□□ 2.55
SHROOM4Q9ULL8 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC30.95■■■□□ 2.55
SHROOM4Q9ULL8 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC30.95■■■□□ 2.55
SHROOM4Q9ULL8 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC30.95■■■□□ 2.55
Retrieved 100 of 98,524 protein–RNA pairs in 42.9 ms