Protein–RNA interactions for Protein: Q9P218

COL20A1, Collagen alpha-1(XX) chain, humanhuman

Predictions only

Length 1,284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL20A1Q9P218 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
COL20A1Q9P218 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
COL20A1Q9P218 AC009053.2-201ENST00000563701 2365 ntBASIC18.5■□□□□ 0.55
COL20A1Q9P218 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
COL20A1Q9P218 NF2-208ENST00000403435 2568 ntTSL 5 BASIC18.5■□□□□ 0.55
COL20A1Q9P218 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
COL20A1Q9P218 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC18.5■□□□□ 0.55
COL20A1Q9P218 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC18.5■□□□□ 0.55
COL20A1Q9P218 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
COL20A1Q9P218 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC18.5■□□□□ 0.55
COL20A1Q9P218 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC18.5■□□□□ 0.55
COL20A1Q9P218 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC18.5■□□□□ 0.55
COL20A1Q9P218 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC18.49■□□□□ 0.55
COL20A1Q9P218 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
COL20A1Q9P218 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC18.49■□□□□ 0.55
COL20A1Q9P218 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC18.49■□□□□ 0.55
COL20A1Q9P218 IMPDH1P4-201ENST00000445028 1534 ntBASIC18.49■□□□□ 0.55
COL20A1Q9P218 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
COL20A1Q9P218 AL136982.4-201ENST00000437689 1740 ntBASIC18.49■□□□□ 0.55
COL20A1Q9P218 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC18.49■□□□□ 0.55
COL20A1Q9P218 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
COL20A1Q9P218 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC18.49■□□□□ 0.55
COL20A1Q9P218 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
COL20A1Q9P218 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC18.49■□□□□ 0.55
COL20A1Q9P218 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
COL20A1Q9P218 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
COL20A1Q9P218 MRGPRF-202ENST00000320913 705 ntTSL 2 BASIC18.49■□□□□ 0.55
COL20A1Q9P218 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
COL20A1Q9P218 ADM2-201ENST00000395737 535 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
COL20A1Q9P218 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC18.49■□□□□ 0.55
COL20A1Q9P218 SLC25A30-AS1-201ENST00000506633 701 ntTSL 3 BASIC18.49■□□□□ 0.55
COL20A1Q9P218 REEP4-207ENST00000523293 913 ntTSL 3 BASIC18.49■□□□□ 0.55
COL20A1Q9P218 STOM-203ENST00000538954 1257 ntTSL 5 BASIC18.49■□□□□ 0.55
COL20A1Q9P218 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
COL20A1Q9P218 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC18.49■□□□□ 0.55
COL20A1Q9P218 COQ9-214ENST00000567933 882 ntTSL 3 BASIC18.49■□□□□ 0.55
COL20A1Q9P218 MYMX-202ENST00000576476 682 ntAPPRIS P1 TSL 3 BASIC18.49■□□□□ 0.55
COL20A1Q9P218 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC18.49■□□□□ 0.55
COL20A1Q9P218 MIR4321-201ENST00000592276 80 ntBASIC18.49■□□□□ 0.55
COL20A1Q9P218 AF228730.6-201ENST00000641497 218 ntBASIC18.49■□□□□ 0.55
COL20A1Q9P218 AC084121.3-201ENST00000641716 218 ntBASIC18.49■□□□□ 0.55
COL20A1Q9P218 AC105233.6-201ENST00000642093 218 ntBASIC18.49■□□□□ 0.55
COL20A1Q9P218 PRKACG-201ENST00000377276 1585 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
COL20A1Q9P218 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC18.49■□□□□ 0.55
COL20A1Q9P218 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
COL20A1Q9P218 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC18.49■□□□□ 0.55
COL20A1Q9P218 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC18.49■□□□□ 0.55
COL20A1Q9P218 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
COL20A1Q9P218 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC18.49■□□□□ 0.55
COL20A1Q9P218 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
COL20A1Q9P218 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC18.49■□□□□ 0.55
COL20A1Q9P218 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC18.49■□□□□ 0.55
COL20A1Q9P218 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC18.49■□□□□ 0.55
COL20A1Q9P218 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
COL20A1Q9P218 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC18.48■□□□□ 0.55
COL20A1Q9P218 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC18.48■□□□□ 0.55
COL20A1Q9P218 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
COL20A1Q9P218 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC18.48■□□□□ 0.55
COL20A1Q9P218 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
COL20A1Q9P218 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC18.48■□□□□ 0.55
COL20A1Q9P218 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
COL20A1Q9P218 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC18.48■□□□□ 0.55
COL20A1Q9P218 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
COL20A1Q9P218 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
COL20A1Q9P218 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
COL20A1Q9P218 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC18.48■□□□□ 0.55
COL20A1Q9P218 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
COL20A1Q9P218 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC18.48■□□□□ 0.55
COL20A1Q9P218 KRT8P12-202ENST00000472924 1397 ntBASIC18.48■□□□□ 0.55
COL20A1Q9P218 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
COL20A1Q9P218 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC18.48■□□□□ 0.55
COL20A1Q9P218 NPM2-201ENST00000289820 1100 ntAPPRIS P2 TSL 1 (best) BASIC18.48■□□□□ 0.55
COL20A1Q9P218 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
COL20A1Q9P218 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
COL20A1Q9P218 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC18.48■□□□□ 0.55
COL20A1Q9P218 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC18.48■□□□□ 0.55
COL20A1Q9P218 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC18.48■□□□□ 0.55
COL20A1Q9P218 PRR29-204ENST00000577953 565 ntTSL 4 BASIC18.48■□□□□ 0.55
COL20A1Q9P218 PRR29-209ENST00000582540 967 ntTSL 2 BASIC18.48■□□□□ 0.55
COL20A1Q9P218 TPGS2-215ENST00000590842 1239 ntTSL 2 BASIC18.48■□□□□ 0.55
COL20A1Q9P218 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
COL20A1Q9P218 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
COL20A1Q9P218 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
COL20A1Q9P218 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
COL20A1Q9P218 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
COL20A1Q9P218 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC18.48■□□□□ 0.55
COL20A1Q9P218 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC18.48■□□□□ 0.55
COL20A1Q9P218 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
COL20A1Q9P218 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC18.48■□□□□ 0.55
COL20A1Q9P218 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
COL20A1Q9P218 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
COL20A1Q9P218 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
COL20A1Q9P218 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
COL20A1Q9P218 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
COL20A1Q9P218 BCL2-203ENST00000589955 5011 ntBASIC18.47■□□□□ 0.55
COL20A1Q9P218 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
COL20A1Q9P218 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC18.47■□□□□ 0.55
COL20A1Q9P218 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
COL20A1Q9P218 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC18.47■□□□□ 0.55
COL20A1Q9P218 AD000864.1-201ENST00000624076 2295 ntBASIC18.47■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 29.9 ms