Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
CHMP1AQ9HD42 RCN1P2-201ENST00000398357 915 ntBASIC14.29□□□□□ -0.12
CHMP1AQ9HD42 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC14.29□□□□□ -0.12
CHMP1AQ9HD42 KRT18P21-201ENST00000515767 1272 ntBASIC14.29□□□□□ -0.12
CHMP1AQ9HD42 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC14.29□□□□□ -0.12
CHMP1AQ9HD42 CIB2-208ENST00000560618 804 ntTSL 2 BASIC14.29□□□□□ -0.12
CHMP1AQ9HD42 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC14.29□□□□□ -0.12
CHMP1AQ9HD42 AC074051.2-201ENST00000565115 352 ntBASIC14.29□□□□□ -0.12
CHMP1AQ9HD42 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
CHMP1AQ9HD42 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC14.29□□□□□ -0.12
CHMP1AQ9HD42 AP002414.4-201ENST00000589764 1148 ntBASIC14.29□□□□□ -0.12
CHMP1AQ9HD42 IL11-204ENST00000590625 1028 ntTSL 2 BASIC14.29□□□□□ -0.12
CHMP1AQ9HD42 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC14.29□□□□□ -0.12
CHMP1AQ9HD42 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
CHMP1AQ9HD42 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
CHMP1AQ9HD42 KIAA1211-206ENST00000541073 4117 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
CHMP1AQ9HD42 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC14.29□□□□□ -0.12
CHMP1AQ9HD42 NUP98-203ENST00000359171 7023 ntTSL 5 BASIC14.29□□□□□ -0.12
CHMP1AQ9HD42 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
CHMP1AQ9HD42 MARCKS-201ENST00000612661 4275 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CHMP1AQ9HD42 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CHMP1AQ9HD42 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC14.29□□□□□ -0.12
CHMP1AQ9HD42 PMPCAP1-201ENST00000508114 1576 ntBASIC14.29□□□□□ -0.12
CHMP1AQ9HD42 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
CHMP1AQ9HD42 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
CHMP1AQ9HD42 SOGA3-201ENST00000465909 3756 ntTSL 5 BASIC14.29□□□□□ -0.12
CHMP1AQ9HD42 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CHMP1AQ9HD42 AL645728.1-201ENST00000366221 2101 ntBASIC14.29□□□□□ -0.12
CHMP1AQ9HD42 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC14.29□□□□□ -0.12
CHMP1AQ9HD42 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC14.29□□□□□ -0.12
CHMP1AQ9HD42 SMARCA4-214ENST00000589677 5181 ntAPPRIS ALT1 TSL 5 BASIC14.28□□□□□ -0.12
CHMP1AQ9HD42 COX10-201ENST00000261643 2873 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CHMP1AQ9HD42 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
CHMP1AQ9HD42 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC14.28□□□□□ -0.12
CHMP1AQ9HD42 CBX7-201ENST00000216133 4081 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CHMP1AQ9HD42 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CHMP1AQ9HD42 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CHMP1AQ9HD42 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CHMP1AQ9HD42 EXOG-201ENST00000287675 2792 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CHMP1AQ9HD42 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CHMP1AQ9HD42 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC14.28□□□□□ -0.12
CHMP1AQ9HD42 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CHMP1AQ9HD42 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
CHMP1AQ9HD42 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
CHMP1AQ9HD42 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CHMP1AQ9HD42 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CHMP1AQ9HD42 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC14.28□□□□□ -0.12
CHMP1AQ9HD42 PPIH-202ENST00000372549 327 ntTSL 3 BASIC14.28□□□□□ -0.12
CHMP1AQ9HD42 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC14.28□□□□□ -0.12
CHMP1AQ9HD42 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC14.28□□□□□ -0.12
CHMP1AQ9HD42 ZXDC-202ENST00000389709 3405 ntAPPRIS P4 TSL 1 (best) BASIC14.28□□□□□ -0.12
CHMP1AQ9HD42 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC14.28□□□□□ -0.12
CHMP1AQ9HD42 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC14.28□□□□□ -0.12
CHMP1AQ9HD42 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC14.28□□□□□ -0.12
CHMP1AQ9HD42 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC14.28□□□□□ -0.12
CHMP1AQ9HD42 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC14.28□□□□□ -0.12
CHMP1AQ9HD42 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
CHMP1AQ9HD42 NUS1P1-201ENST00000446295 882 ntBASIC14.28□□□□□ -0.12
CHMP1AQ9HD42 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC14.28□□□□□ -0.12
CHMP1AQ9HD42 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC14.28□□□□□ -0.12
CHMP1AQ9HD42 AC104819.1-201ENST00000504587 486 ntBASIC14.28□□□□□ -0.12
CHMP1AQ9HD42 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
CHMP1AQ9HD42 CNOT8-204ENST00000517876 2708 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
CHMP1AQ9HD42 PTK2-216ENST00000519881 863 ntTSL 3 BASIC14.28□□□□□ -0.12
CHMP1AQ9HD42 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC14.28□□□□□ -0.12
CHMP1AQ9HD42 AC087388.1-201ENST00000571370 1112 ntBASIC14.28□□□□□ -0.12
CHMP1AQ9HD42 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
CHMP1AQ9HD42 BNIP3P18-201ENST00000593976 575 ntBASIC14.28□□□□□ -0.12
CHMP1AQ9HD42 AC148477.5-201ENST00000625164 1645 ntBASIC14.28□□□□□ -0.12
CHMP1AQ9HD42 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC14.28□□□□□ -0.12
CHMP1AQ9HD42 ELFN1-201ENST00000424383 3845 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
CHMP1AQ9HD42 ABCG5-202ENST00000405322 2896 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
CHMP1AQ9HD42 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
CHMP1AQ9HD42 MTA1-203ENST00000406191 2770 ntAPPRIS P5 TSL 2 BASIC14.28□□□□□ -0.12
CHMP1AQ9HD42 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CHMP1AQ9HD42 EXOC3L1-201ENST00000314586 2510 ntAPPRIS P1 TSL 2 BASIC14.28□□□□□ -0.12
CHMP1AQ9HD42 ZFR2-201ENST00000262961 4756 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.12
CHMP1AQ9HD42 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC14.27□□□□□ -0.12
CHMP1AQ9HD42 BID-213ENST00000615414 2236 ntTSL 5 BASIC14.27□□□□□ -0.12
CHMP1AQ9HD42 EXOC6B-202ENST00000410104 5795 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
CHMP1AQ9HD42 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.12
CHMP1AQ9HD42 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC14.27□□□□□ -0.12
CHMP1AQ9HD42 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
CHMP1AQ9HD42 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC14.27□□□□□ -0.12
CHMP1AQ9HD42 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC14.27□□□□□ -0.12
CHMP1AQ9HD42 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC14.27□□□□□ -0.12
CHMP1AQ9HD42 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC14.27□□□□□ -0.12
CHMP1AQ9HD42 PABPC4-202ENST00000372857 3048 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
CHMP1AQ9HD42 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.12
CHMP1AQ9HD42 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.12
CHMP1AQ9HD42 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
CHMP1AQ9HD42 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC14.27□□□□□ -0.12
CHMP1AQ9HD42 RSBN1-204ENST00000612242 6592 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.13
CHMP1AQ9HD42 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
CHMP1AQ9HD42 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
CHMP1AQ9HD42 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC14.27□□□□□ -0.13
CHMP1AQ9HD42 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC14.27□□□□□ -0.13
CHMP1AQ9HD42 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.13
CHMP1AQ9HD42 SPDYE21P-201ENST00000413323 827 ntBASIC14.27□□□□□ -0.13
CHMP1AQ9HD42 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 39 ms