Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
TRIM39Q9HCM9 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC16.38■□□□□ 0.21
TRIM39Q9HCM9 AL031731.1-201ENST00000642131 2094 ntBASIC16.38■□□□□ 0.21
TRIM39Q9HCM9 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
TRIM39Q9HCM9 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
TRIM39Q9HCM9 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
TRIM39Q9HCM9 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
TRIM39Q9HCM9 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC16.38■□□□□ 0.21
TRIM39Q9HCM9 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC16.38■□□□□ 0.21
TRIM39Q9HCM9 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC16.38■□□□□ 0.21
TRIM39Q9HCM9 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC16.38■□□□□ 0.21
TRIM39Q9HCM9 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC16.38■□□□□ 0.21
TRIM39Q9HCM9 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC16.38■□□□□ 0.21
TRIM39Q9HCM9 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
TRIM39Q9HCM9 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC16.38■□□□□ 0.21
TRIM39Q9HCM9 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC16.38■□□□□ 0.21
TRIM39Q9HCM9 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC16.38■□□□□ 0.21
TRIM39Q9HCM9 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
TRIM39Q9HCM9 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC16.38■□□□□ 0.21
TRIM39Q9HCM9 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC16.38■□□□□ 0.21
TRIM39Q9HCM9 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC16.38■□□□□ 0.21
TRIM39Q9HCM9 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC16.38■□□□□ 0.21
TRIM39Q9HCM9 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC16.38■□□□□ 0.21
TRIM39Q9HCM9 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC16.38■□□□□ 0.21
TRIM39Q9HCM9 METTL23-205ENST00000588302 925 ntTSL 5 BASIC16.38■□□□□ 0.21
TRIM39Q9HCM9 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC16.38■□□□□ 0.21
TRIM39Q9HCM9 AC020765.3-201ENST00000613051 740 ntBASIC16.38■□□□□ 0.21
TRIM39Q9HCM9 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC16.38■□□□□ 0.21
TRIM39Q9HCM9 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
TRIM39Q9HCM9 CARD10-201ENST00000251973 3934 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
TRIM39Q9HCM9 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC16.38■□□□□ 0.21
TRIM39Q9HCM9 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
TRIM39Q9HCM9 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC16.38■□□□□ 0.21
TRIM39Q9HCM9 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
TRIM39Q9HCM9 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
TRIM39Q9HCM9 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
TRIM39Q9HCM9 MAU2-201ENST00000262815 4994 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
TRIM39Q9HCM9 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
TRIM39Q9HCM9 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
TRIM39Q9HCM9 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC16.37■□□□□ 0.21
TRIM39Q9HCM9 TMEM97-201ENST00000226230 2568 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
TRIM39Q9HCM9 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
TRIM39Q9HCM9 GTF3C4-201ENST00000372146 9043 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
TRIM39Q9HCM9 MAP3K11-201ENST00000309100 3566 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
TRIM39Q9HCM9 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
TRIM39Q9HCM9 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
TRIM39Q9HCM9 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC16.37■□□□□ 0.21
TRIM39Q9HCM9 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
TRIM39Q9HCM9 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC16.37■□□□□ 0.21
TRIM39Q9HCM9 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
TRIM39Q9HCM9 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC16.37■□□□□ 0.21
TRIM39Q9HCM9 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
TRIM39Q9HCM9 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC16.37■□□□□ 0.21
TRIM39Q9HCM9 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
TRIM39Q9HCM9 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
TRIM39Q9HCM9 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
TRIM39Q9HCM9 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC16.37■□□□□ 0.21
TRIM39Q9HCM9 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
TRIM39Q9HCM9 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
TRIM39Q9HCM9 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
TRIM39Q9HCM9 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
TRIM39Q9HCM9 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
TRIM39Q9HCM9 AL592309.1-201ENST00000443127 649 ntBASIC16.37■□□□□ 0.21
TRIM39Q9HCM9 URGCP-206ENST00000446958 365 ntTSL 2 BASIC16.37■□□□□ 0.21
TRIM39Q9HCM9 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC16.37■□□□□ 0.21
TRIM39Q9HCM9 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC16.37■□□□□ 0.21
TRIM39Q9HCM9 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC16.37■□□□□ 0.21
TRIM39Q9HCM9 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC16.37■□□□□ 0.21
TRIM39Q9HCM9 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC16.37■□□□□ 0.21
TRIM39Q9HCM9 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC16.37■□□□□ 0.21
TRIM39Q9HCM9 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC16.37■□□□□ 0.21
TRIM39Q9HCM9 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC16.37■□□□□ 0.21
TRIM39Q9HCM9 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC16.37■□□□□ 0.21
TRIM39Q9HCM9 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC16.37■□□□□ 0.21
TRIM39Q9HCM9 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC16.37■□□□□ 0.21
TRIM39Q9HCM9 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
TRIM39Q9HCM9 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
TRIM39Q9HCM9 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
TRIM39Q9HCM9 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
TRIM39Q9HCM9 HLA-A-202ENST00000376806 1854 ntBASIC16.37■□□□□ 0.21
TRIM39Q9HCM9 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC16.37■□□□□ 0.21
TRIM39Q9HCM9 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC16.37■□□□□ 0.21
TRIM39Q9HCM9 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
TRIM39Q9HCM9 ARHGEF4-205ENST00000409359 5489 ntTSL 5 BASIC16.37■□□□□ 0.21
TRIM39Q9HCM9 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
TRIM39Q9HCM9 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC16.37■□□□□ 0.21
TRIM39Q9HCM9 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC16.37■□□□□ 0.21
TRIM39Q9HCM9 BMP7-201ENST00000395863 4013 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
TRIM39Q9HCM9 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC16.36■□□□□ 0.21
TRIM39Q9HCM9 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
TRIM39Q9HCM9 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC16.36■□□□□ 0.21
TRIM39Q9HCM9 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC16.36■□□□□ 0.21
TRIM39Q9HCM9 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC16.36■□□□□ 0.21
TRIM39Q9HCM9 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
TRIM39Q9HCM9 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC16.36■□□□□ 0.21
TRIM39Q9HCM9 GPAA1P2-202ENST00000606848 1787 ntBASIC16.36■□□□□ 0.21
TRIM39Q9HCM9 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC16.36■□□□□ 0.21
TRIM39Q9HCM9 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC16.36■□□□□ 0.21
TRIM39Q9HCM9 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
TRIM39Q9HCM9 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 23.9 ms