Protein–RNA interactions for Protein: Q9C0I3

CCSER1, Serine-rich coiled-coil domain-containing protein 1, humanhuman

Predictions only

Length 900 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCSER1Q9C0I3 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CCSER1Q9C0I3 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CCSER1Q9C0I3 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
CCSER1Q9C0I3 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
CCSER1Q9C0I3 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC18.4■□□□□ 0.54
CCSER1Q9C0I3 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
CCSER1Q9C0I3 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CCSER1Q9C0I3 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC18.4■□□□□ 0.54
CCSER1Q9C0I3 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CCSER1Q9C0I3 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC18.4■□□□□ 0.54
CCSER1Q9C0I3 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CCSER1Q9C0I3 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC18.4■□□□□ 0.54
CCSER1Q9C0I3 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC18.4■□□□□ 0.54
CCSER1Q9C0I3 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CCSER1Q9C0I3 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CCSER1Q9C0I3 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
CCSER1Q9C0I3 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC18.4■□□□□ 0.54
CCSER1Q9C0I3 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CCSER1Q9C0I3 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC18.4■□□□□ 0.54
CCSER1Q9C0I3 IGHV3OR16-6-201ENST00000568775 360 ntBASIC18.4■□□□□ 0.54
CCSER1Q9C0I3 AC002347.1-201ENST00000569543 541 ntBASIC18.4■□□□□ 0.54
CCSER1Q9C0I3 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC18.4■□□□□ 0.54
CCSER1Q9C0I3 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
CCSER1Q9C0I3 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC18.4■□□□□ 0.54
CCSER1Q9C0I3 AC023511.2-201ENST00000618803 211 ntBASIC18.4■□□□□ 0.54
CCSER1Q9C0I3 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
CCSER1Q9C0I3 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
CCSER1Q9C0I3 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC18.4■□□□□ 0.54
CCSER1Q9C0I3 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
CCSER1Q9C0I3 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CCSER1Q9C0I3 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
CCSER1Q9C0I3 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC18.4■□□□□ 0.54
CCSER1Q9C0I3 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CCSER1Q9C0I3 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CCSER1Q9C0I3 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CCSER1Q9C0I3 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.54
CCSER1Q9C0I3 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
CCSER1Q9C0I3 AL589702.1-201ENST00000641229 1509 ntBASIC18.39■□□□□ 0.54
CCSER1Q9C0I3 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC18.39■□□□□ 0.53
CCSER1Q9C0I3 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CCSER1Q9C0I3 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CCSER1Q9C0I3 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CCSER1Q9C0I3 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CCSER1Q9C0I3 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CCSER1Q9C0I3 NARF-206ENST00000457415 1668 ntTSL 5 BASIC18.39■□□□□ 0.53
CCSER1Q9C0I3 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
CCSER1Q9C0I3 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CCSER1Q9C0I3 PMP22-202ENST00000395936 816 ntTSL 3 BASIC18.39■□□□□ 0.53
CCSER1Q9C0I3 AL355306.1-201ENST00000415580 579 ntBASIC18.39■□□□□ 0.53
CCSER1Q9C0I3 ADH5P3-201ENST00000433842 1137 ntBASIC18.39■□□□□ 0.53
CCSER1Q9C0I3 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC18.39■□□□□ 0.53
CCSER1Q9C0I3 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC18.39■□□□□ 0.53
CCSER1Q9C0I3 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC18.39■□□□□ 0.53
CCSER1Q9C0I3 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
CCSER1Q9C0I3 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CCSER1Q9C0I3 BSG-215ENST00000618006 1329 ntTSL 2 BASIC18.39■□□□□ 0.53
CCSER1Q9C0I3 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CCSER1Q9C0I3 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CCSER1Q9C0I3 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CCSER1Q9C0I3 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC18.39■□□□□ 0.53
CCSER1Q9C0I3 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
CCSER1Q9C0I3 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CCSER1Q9C0I3 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC18.39■□□□□ 0.53
CCSER1Q9C0I3 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC18.39■□□□□ 0.53
CCSER1Q9C0I3 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CCSER1Q9C0I3 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
CCSER1Q9C0I3 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CCSER1Q9C0I3 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CCSER1Q9C0I3 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CCSER1Q9C0I3 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
CCSER1Q9C0I3 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC18.38■□□□□ 0.53
CCSER1Q9C0I3 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CCSER1Q9C0I3 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
CCSER1Q9C0I3 GPR176-205ENST00000561100 2816 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CCSER1Q9C0I3 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CCSER1Q9C0I3 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC18.38■□□□□ 0.53
CCSER1Q9C0I3 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC18.38■□□□□ 0.53
CCSER1Q9C0I3 NEK7-201ENST00000367383 586 ntTSL 2 BASIC18.38■□□□□ 0.53
CCSER1Q9C0I3 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CCSER1Q9C0I3 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC18.38■□□□□ 0.53
CCSER1Q9C0I3 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CCSER1Q9C0I3 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC18.38■□□□□ 0.53
CCSER1Q9C0I3 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC18.38■□□□□ 0.53
CCSER1Q9C0I3 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CCSER1Q9C0I3 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC18.38■□□□□ 0.53
CCSER1Q9C0I3 COX10-202ENST00000429152 875 ntTSL 2 BASIC18.38■□□□□ 0.53
CCSER1Q9C0I3 AL671277.1-201ENST00000429656 993 ntBASIC18.38■□□□□ 0.53
CCSER1Q9C0I3 FAM58CP-201ENST00000435741 640 ntBASIC18.38■□□□□ 0.53
CCSER1Q9C0I3 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC18.38■□□□□ 0.53
CCSER1Q9C0I3 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC18.38■□□□□ 0.53
CCSER1Q9C0I3 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC18.38■□□□□ 0.53
CCSER1Q9C0I3 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
CCSER1Q9C0I3 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC18.38■□□□□ 0.53
CCSER1Q9C0I3 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC18.38■□□□□ 0.53
CCSER1Q9C0I3 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC18.38■□□□□ 0.53
CCSER1Q9C0I3 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC18.38■□□□□ 0.53
CCSER1Q9C0I3 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC18.38■□□□□ 0.53
CCSER1Q9C0I3 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CCSER1Q9C0I3 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC18.38■□□□□ 0.53
CCSER1Q9C0I3 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 37.8 ms