Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC16.89■□□□□ 0.29
TRIM56Q9BRZ2 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC16.89■□□□□ 0.29
TRIM56Q9BRZ2 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC16.89■□□□□ 0.29
TRIM56Q9BRZ2 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
TRIM56Q9BRZ2 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC16.89■□□□□ 0.29
TRIM56Q9BRZ2 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC16.89■□□□□ 0.29
TRIM56Q9BRZ2 AC148477.8-201ENST00000624298 468 ntBASIC16.89■□□□□ 0.29
TRIM56Q9BRZ2 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
TRIM56Q9BRZ2 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC16.89■□□□□ 0.29
TRIM56Q9BRZ2 LINC00554-201ENST00000564841 3011 ntBASIC16.89■□□□□ 0.29
TRIM56Q9BRZ2 FBN2-205ENST00000508989 4987 ntTSL 2 BASIC16.89■□□□□ 0.29
TRIM56Q9BRZ2 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
TRIM56Q9BRZ2 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
TRIM56Q9BRZ2 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC16.89■□□□□ 0.29
TRIM56Q9BRZ2 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
TRIM56Q9BRZ2 OSGIN2-202ENST00000451899 4266 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
TRIM56Q9BRZ2 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
TRIM56Q9BRZ2 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC16.89■□□□□ 0.29
TRIM56Q9BRZ2 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC16.89■□□□□ 0.29
TRIM56Q9BRZ2 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC16.88■□□□□ 0.29
TRIM56Q9BRZ2 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
TRIM56Q9BRZ2 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
TRIM56Q9BRZ2 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
TRIM56Q9BRZ2 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC16.88■□□□□ 0.29
TRIM56Q9BRZ2 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC16.88■□□□□ 0.29
TRIM56Q9BRZ2 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
TRIM56Q9BRZ2 AC131009.4-201ENST00000624048 1740 ntBASIC16.88■□□□□ 0.29
TRIM56Q9BRZ2 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
TRIM56Q9BRZ2 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
TRIM56Q9BRZ2 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
TRIM56Q9BRZ2 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
TRIM56Q9BRZ2 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC16.88■□□□□ 0.29
TRIM56Q9BRZ2 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
TRIM56Q9BRZ2 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
TRIM56Q9BRZ2 RPS15P9-201ENST00000494093 319 ntBASIC16.88■□□□□ 0.29
TRIM56Q9BRZ2 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC16.88■□□□□ 0.29
TRIM56Q9BRZ2 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC16.88■□□□□ 0.29
TRIM56Q9BRZ2 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC16.88■□□□□ 0.29
TRIM56Q9BRZ2 BMF-207ENST00000559701 630 ntTSL 3 BASIC16.88■□□□□ 0.29
TRIM56Q9BRZ2 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC16.88■□□□□ 0.29
TRIM56Q9BRZ2 CYB561-216ENST00000582297 897 ntTSL 3 BASIC16.88■□□□□ 0.29
TRIM56Q9BRZ2 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC16.88■□□□□ 0.29
TRIM56Q9BRZ2 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC16.88■□□□□ 0.29
TRIM56Q9BRZ2 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC16.88■□□□□ 0.29
TRIM56Q9BRZ2 AL139011.1-202ENST00000642063 584 ntBASIC16.88■□□□□ 0.29
TRIM56Q9BRZ2 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
TRIM56Q9BRZ2 MTCL1-203ENST00000400050 6042 ntAPPRIS P2 TSL 5 BASIC16.88■□□□□ 0.29
TRIM56Q9BRZ2 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
TRIM56Q9BRZ2 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
TRIM56Q9BRZ2 NBPF9-207ENST00000615421 5835 ntAPPRIS P2 TSL 5 BASIC16.88■□□□□ 0.29
TRIM56Q9BRZ2 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC16.88■□□□□ 0.29
TRIM56Q9BRZ2 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC16.88■□□□□ 0.29
TRIM56Q9BRZ2 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
TRIM56Q9BRZ2 MYB-242ENST00000618728 3545 ntTSL 5 BASIC16.88■□□□□ 0.29
TRIM56Q9BRZ2 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC16.88■□□□□ 0.29
TRIM56Q9BRZ2 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
TRIM56Q9BRZ2 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
TRIM56Q9BRZ2 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC16.88■□□□□ 0.29
TRIM56Q9BRZ2 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC16.87■□□□□ 0.29
TRIM56Q9BRZ2 TNR-201ENST00000263525 5190 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
TRIM56Q9BRZ2 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
TRIM56Q9BRZ2 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
TRIM56Q9BRZ2 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC16.87■□□□□ 0.29
TRIM56Q9BRZ2 AP002414.3-201ENST00000589352 1468 ntBASIC16.87■□□□□ 0.29
TRIM56Q9BRZ2 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
TRIM56Q9BRZ2 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC16.87■□□□□ 0.29
TRIM56Q9BRZ2 MPPED1-202ENST00000417669 3657 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
TRIM56Q9BRZ2 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
TRIM56Q9BRZ2 SLCO5A1-203ENST00000524945 3725 ntTSL 2 BASIC16.87■□□□□ 0.29
TRIM56Q9BRZ2 GTF3C4-201ENST00000372146 9043 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
TRIM56Q9BRZ2 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
TRIM56Q9BRZ2 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
TRIM56Q9BRZ2 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC16.87■□□□□ 0.29
TRIM56Q9BRZ2 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC16.87■□□□□ 0.29
TRIM56Q9BRZ2 CENPM-204ENST00000402420 688 ntTSL 5 BASIC16.87■□□□□ 0.29
TRIM56Q9BRZ2 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC16.87■□□□□ 0.29
TRIM56Q9BRZ2 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
TRIM56Q9BRZ2 RNPS1P1-201ENST00000507437 918 ntBASIC16.87■□□□□ 0.29
TRIM56Q9BRZ2 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC16.87■□□□□ 0.29
TRIM56Q9BRZ2 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC16.87■□□□□ 0.29
TRIM56Q9BRZ2 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC16.87■□□□□ 0.29
TRIM56Q9BRZ2 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
TRIM56Q9BRZ2 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC16.87■□□□□ 0.29
TRIM56Q9BRZ2 ABBA01031661.1-201ENST00000634362 1253 ntBASIC16.87■□□□□ 0.29
TRIM56Q9BRZ2 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC16.87■□□□□ 0.29
TRIM56Q9BRZ2 ATG9B-212ENST00000639579 4539 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
TRIM56Q9BRZ2 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC16.87■□□□□ 0.29
TRIM56Q9BRZ2 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC16.87■□□□□ 0.29
TRIM56Q9BRZ2 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
TRIM56Q9BRZ2 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
TRIM56Q9BRZ2 KIF3A-202ENST00000378746 6325 ntAPPRIS P3 TSL 5 BASIC16.87■□□□□ 0.29
TRIM56Q9BRZ2 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
TRIM56Q9BRZ2 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
TRIM56Q9BRZ2 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
TRIM56Q9BRZ2 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC16.87■□□□□ 0.29
TRIM56Q9BRZ2 AC010491.1-201ENST00000563101 2797 ntBASIC16.87■□□□□ 0.29
TRIM56Q9BRZ2 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
TRIM56Q9BRZ2 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
TRIM56Q9BRZ2 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
TRIM56Q9BRZ2 SPOCK2-202ENST00000373109 5445 ntAPPRIS P2 TSL 1 (best) BASIC16.87■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 28.8 ms