Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC17.47■□□□□ 0.39
PAAF1Q9BRP4 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
PAAF1Q9BRP4 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
PAAF1Q9BRP4 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
PAAF1Q9BRP4 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
PAAF1Q9BRP4 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
PAAF1Q9BRP4 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
PAAF1Q9BRP4 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
PAAF1Q9BRP4 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
PAAF1Q9BRP4 RPS19-201ENST00000221975 500 ntTSL 3 BASIC17.47■□□□□ 0.39
PAAF1Q9BRP4 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC17.47■□□□□ 0.39
PAAF1Q9BRP4 NPM2-201ENST00000289820 1100 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
PAAF1Q9BRP4 LCE3E-201ENST00000368789 611 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
PAAF1Q9BRP4 TRAPPC3-203ENST00000373163 951 ntTSL 3 BASIC17.47■□□□□ 0.39
PAAF1Q9BRP4 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
PAAF1Q9BRP4 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
PAAF1Q9BRP4 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
PAAF1Q9BRP4 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
PAAF1Q9BRP4 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
PAAF1Q9BRP4 REEP4-207ENST00000523293 913 ntTSL 3 BASIC17.47■□□□□ 0.39
PAAF1Q9BRP4 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC17.47■□□□□ 0.39
PAAF1Q9BRP4 AC084125.2-203ENST00000532766 821 ntTSL 3 BASIC17.47■□□□□ 0.39
PAAF1Q9BRP4 ZNF710-AS1-201ENST00000558334 1168 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
PAAF1Q9BRP4 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC17.47■□□□□ 0.39
PAAF1Q9BRP4 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC17.47■□□□□ 0.39
PAAF1Q9BRP4 TPGS2-215ENST00000590842 1239 ntTSL 2 BASIC17.47■□□□□ 0.39
PAAF1Q9BRP4 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC17.47■□□□□ 0.39
PAAF1Q9BRP4 AC009118.2-201ENST00000613275 655 ntBASIC17.47■□□□□ 0.39
PAAF1Q9BRP4 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
PAAF1Q9BRP4 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
PAAF1Q9BRP4 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC17.47■□□□□ 0.39
PAAF1Q9BRP4 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
PAAF1Q9BRP4 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
PAAF1Q9BRP4 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC17.47■□□□□ 0.39
PAAF1Q9BRP4 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC17.47■□□□□ 0.39
PAAF1Q9BRP4 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
PAAF1Q9BRP4 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
PAAF1Q9BRP4 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
PAAF1Q9BRP4 AC026471.1-201ENST00000564629 3026 ntBASIC17.47■□□□□ 0.39
PAAF1Q9BRP4 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
PAAF1Q9BRP4 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC17.47■□□□□ 0.39
PAAF1Q9BRP4 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
PAAF1Q9BRP4 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.39
PAAF1Q9BRP4 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
PAAF1Q9BRP4 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
PAAF1Q9BRP4 U82695.1-201ENST00000635752 1889 ntBASIC17.46■□□□□ 0.39
PAAF1Q9BRP4 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC17.46■□□□□ 0.39
PAAF1Q9BRP4 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
PAAF1Q9BRP4 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
PAAF1Q9BRP4 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
PAAF1Q9BRP4 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
PAAF1Q9BRP4 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
PAAF1Q9BRP4 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC17.46■□□□□ 0.39
PAAF1Q9BRP4 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC17.46■□□□□ 0.39
PAAF1Q9BRP4 LRP5L-201ENST00000402785 1193 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.39
PAAF1Q9BRP4 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC17.46■□□□□ 0.39
PAAF1Q9BRP4 RBM7-207ENST00000544582 692 ntTSL 3 BASIC17.46■□□□□ 0.39
PAAF1Q9BRP4 AC239800.4-201ENST00000603712 296 ntBASIC17.46■□□□□ 0.39
PAAF1Q9BRP4 AC004790.1-201ENST00000612686 536 ntBASIC17.46■□□□□ 0.39
PAAF1Q9BRP4 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC17.46■□□□□ 0.39
PAAF1Q9BRP4 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
PAAF1Q9BRP4 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC17.46■□□□□ 0.39
PAAF1Q9BRP4 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
PAAF1Q9BRP4 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
PAAF1Q9BRP4 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
PAAF1Q9BRP4 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
PAAF1Q9BRP4 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
PAAF1Q9BRP4 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
PAAF1Q9BRP4 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
PAAF1Q9BRP4 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
PAAF1Q9BRP4 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC17.45■□□□□ 0.38
PAAF1Q9BRP4 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC17.45■□□□□ 0.38
PAAF1Q9BRP4 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC17.45■□□□□ 0.38
PAAF1Q9BRP4 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC17.45■□□□□ 0.38
PAAF1Q9BRP4 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC17.45■□□□□ 0.38
PAAF1Q9BRP4 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC17.45■□□□□ 0.38
PAAF1Q9BRP4 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC17.45■□□□□ 0.38
PAAF1Q9BRP4 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
PAAF1Q9BRP4 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
PAAF1Q9BRP4 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC17.45■□□□□ 0.38
PAAF1Q9BRP4 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
PAAF1Q9BRP4 LINC01144-201ENST00000626198 1710 ntBASIC17.45■□□□□ 0.38
PAAF1Q9BRP4 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
PAAF1Q9BRP4 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC17.45■□□□□ 0.38
PAAF1Q9BRP4 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC17.45■□□□□ 0.38
PAAF1Q9BRP4 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC17.45■□□□□ 0.38
PAAF1Q9BRP4 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC17.45■□□□□ 0.38
PAAF1Q9BRP4 AC010336.2-201ENST00000564226 506 ntBASIC17.45■□□□□ 0.38
PAAF1Q9BRP4 PRR29-204ENST00000577953 565 ntTSL 4 BASIC17.45■□□□□ 0.38
PAAF1Q9BRP4 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC17.45■□□□□ 0.38
PAAF1Q9BRP4 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC17.45■□□□□ 0.38
PAAF1Q9BRP4 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC17.45■□□□□ 0.38
PAAF1Q9BRP4 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
PAAF1Q9BRP4 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC17.45■□□□□ 0.38
PAAF1Q9BRP4 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
PAAF1Q9BRP4 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
PAAF1Q9BRP4 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
PAAF1Q9BRP4 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
PAAF1Q9BRP4 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC17.45■□□□□ 0.38
PAAF1Q9BRP4 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 44.5 ms