Protein–RNA interactions for Protein: Q96RI1

NR1H4, Bile acid receptor, humanhuman

Predicted RBP Predictions only

Length 486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NR1H4Q96RI1 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
NR1H4Q96RI1 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
NR1H4Q96RI1 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC15.59■□□□□ 0.09
NR1H4Q96RI1 AC112698.1-201ENST00000510299 916 ntBASIC15.59■□□□□ 0.09
NR1H4Q96RI1 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC15.59■□□□□ 0.09
NR1H4Q96RI1 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC15.59■□□□□ 0.09
NR1H4Q96RI1 USP36-216ENST00000589424 970 ntTSL 5 BASIC15.59■□□□□ 0.09
NR1H4Q96RI1 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC15.59■□□□□ 0.09
NR1H4Q96RI1 CR769767.2-201ENST00000622735 460 ntBASIC15.59■□□□□ 0.09
NR1H4Q96RI1 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
NR1H4Q96RI1 PPM1B-204ENST00000378551 3877 ntAPPRIS ALT1 TSL 1 (best) BASIC15.59■□□□□ 0.09
NR1H4Q96RI1 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC15.59■□□□□ 0.09
NR1H4Q96RI1 KLHL33-203ENST00000637228 5404 ntTSL 5 BASIC15.59■□□□□ 0.09
NR1H4Q96RI1 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC15.59■□□□□ 0.09
NR1H4Q96RI1 RUBCNL-204ENST00000378797 3206 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
NR1H4Q96RI1 CEP63-212ENST00000513612 2903 ntAPPRIS P3 TSL 2 BASIC15.59■□□□□ 0.09
NR1H4Q96RI1 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
NR1H4Q96RI1 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC15.59■□□□□ 0.09
NR1H4Q96RI1 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
NR1H4Q96RI1 TGIF2-202ENST00000373874 3432 ntAPPRIS P1 TSL 2 BASIC15.59■□□□□ 0.09
NR1H4Q96RI1 ST3GAL3-208ENST00000361392 2243 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
NR1H4Q96RI1 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
NR1H4Q96RI1 GLMP-214ENST00000614643 1851 ntAPPRIS ALT2 TSL 2 BASIC15.59■□□□□ 0.09
NR1H4Q96RI1 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC15.59■□□□□ 0.09
NR1H4Q96RI1 VARS2-201ENST00000321897 4073 ntTSL 1 (best) BASIC15.58■□□□□ 0.09
NR1H4Q96RI1 PSD2-201ENST00000274710 4513 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
NR1H4Q96RI1 WASH2P-202ENST00000538033 2800 ntTSL 2 BASIC15.58■□□□□ 0.09
NR1H4Q96RI1 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC15.58■□□□□ 0.09
NR1H4Q96RI1 OSBPL3-201ENST00000313367 6760 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
NR1H4Q96RI1 AC041040.2-201ENST00000622926 2899 ntBASIC15.58■□□□□ 0.09
NR1H4Q96RI1 SNX14-202ENST00000346348 3348 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.09
NR1H4Q96RI1 SMARCA2-214ENST00000450198 5602 ntTSL 1 (best) BASIC15.58■□□□□ 0.09
NR1H4Q96RI1 PDE8B-202ENST00000333194 2572 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.09
NR1H4Q96RI1 AC023024.1-201ENST00000558838 2590 ntTSL 1 (best) BASIC15.58■□□□□ 0.09
NR1H4Q96RI1 ZNF280D-207ENST00000559237 4902 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.09
NR1H4Q96RI1 TERT-201ENST00000310581 4018 ntAPPRIS P3 TSL 1 (best) BASIC15.58■□□□□ 0.08
NR1H4Q96RI1 SIMC1-205ENST00000443967 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.08
NR1H4Q96RI1 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
NR1H4Q96RI1 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
NR1H4Q96RI1 FZD5-201ENST00000295417 6708 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
NR1H4Q96RI1 AC013726.1-201ENST00000563747 2285 ntBASIC15.58■□□□□ 0.08
NR1H4Q96RI1 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC15.58■□□□□ 0.08
NR1H4Q96RI1 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
NR1H4Q96RI1 UNKL-201ENST00000248104 4320 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
NR1H4Q96RI1 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC15.58■□□□□ 0.08
NR1H4Q96RI1 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
NR1H4Q96RI1 UNC93B2-201ENST00000285383 730 ntBASIC15.58■□□□□ 0.08
NR1H4Q96RI1 BAALC-201ENST00000297574 801 ntTSL 3 BASIC15.58■□□□□ 0.08
NR1H4Q96RI1 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
NR1H4Q96RI1 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC15.58■□□□□ 0.08
NR1H4Q96RI1 TSPY7P-201ENST00000431358 1114 ntBASIC15.58■□□□□ 0.08
NR1H4Q96RI1 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC15.58■□□□□ 0.08
NR1H4Q96RI1 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC15.58■□□□□ 0.08
NR1H4Q96RI1 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC15.58■□□□□ 0.08
NR1H4Q96RI1 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC15.58■□□□□ 0.08
NR1H4Q96RI1 ADD2-208ENST00000430656 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.08
NR1H4Q96RI1 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC15.58■□□□□ 0.08
NR1H4Q96RI1 NUP62-212ENST00000597723 1824 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
NR1H4Q96RI1 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
NR1H4Q96RI1 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC15.58■□□□□ 0.08
NR1H4Q96RI1 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.08
NR1H4Q96RI1 TRAF7-201ENST00000326181 3700 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
NR1H4Q96RI1 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC15.58■□□□□ 0.08
NR1H4Q96RI1 VSIG10-202ENST00000359236 4946 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
NR1H4Q96RI1 TOMM40L-201ENST00000367987 2636 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
NR1H4Q96RI1 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
NR1H4Q96RI1 RPS6KL1-210ENST00000555647 3309 ntAPPRIS P1 TSL 5 BASIC15.58■□□□□ 0.08
NR1H4Q96RI1 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC15.58■□□□□ 0.08
NR1H4Q96RI1 BRF1-211ENST00000547530 3358 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
NR1H4Q96RI1 TMCO3-207ENST00000474393 2843 ntTSL 2 BASIC15.58■□□□□ 0.08
NR1H4Q96RI1 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
NR1H4Q96RI1 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
NR1H4Q96RI1 MEGF11-203ENST00000409699 6163 ntAPPRIS P1 TSL 5 BASIC15.57■□□□□ 0.08
NR1H4Q96RI1 PCSK2-205ENST00000536609 2275 ntTSL 2 BASIC15.57■□□□□ 0.08
NR1H4Q96RI1 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC15.57■□□□□ 0.08
NR1H4Q96RI1 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC15.57■□□□□ 0.08
NR1H4Q96RI1 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC15.57■□□□□ 0.08
NR1H4Q96RI1 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC15.57■□□□□ 0.08
NR1H4Q96RI1 AL353803.2-201ENST00000436510 1846 ntTSL 5 BASIC15.57■□□□□ 0.08
NR1H4Q96RI1 MARK3-205ENST00000429436 3371 ntAPPRIS ALT1 TSL 1 (best) BASIC15.57■□□□□ 0.08
NR1H4Q96RI1 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC15.57■□□□□ 0.08
NR1H4Q96RI1 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
NR1H4Q96RI1 TAF6-201ENST00000344095 2727 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
NR1H4Q96RI1 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
NR1H4Q96RI1 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC15.57■□□□□ 0.08
NR1H4Q96RI1 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
NR1H4Q96RI1 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC15.57■□□□□ 0.08
NR1H4Q96RI1 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC15.57■□□□□ 0.08
NR1H4Q96RI1 IGHV3-52-201ENST00000519770 353 ntBASIC15.57■□□□□ 0.08
NR1H4Q96RI1 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
NR1H4Q96RI1 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC15.57■□□□□ 0.08
NR1H4Q96RI1 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC15.57■□□□□ 0.08
NR1H4Q96RI1 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC15.57■□□□□ 0.08
NR1H4Q96RI1 GPAT2-202ENST00000434632 3061 ntAPPRIS P1 TSL 5 BASIC15.57■□□□□ 0.08
NR1H4Q96RI1 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC15.57■□□□□ 0.08
NR1H4Q96RI1 ARFGAP1-203ENST00000370283 3281 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
NR1H4Q96RI1 PLPP3-201ENST00000371250 3292 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
NR1H4Q96RI1 C4A-259ENST00000498271 5269 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
NR1H4Q96RI1 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
NR1H4Q96RI1 HIPK3-203ENST00000456517 7399 ntAPPRIS P1 TSL 2 BASIC15.57■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 38.1 ms