Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 RASGRF1-202ENST00000419573 6294 ntTSL 2 BASIC18.76■□□□□ 0.59
ERCC4Q92889 SCART1-206ENST00000640237 4351 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
ERCC4Q92889 HMGA2-210ENST00000541363 8094 ntAPPRIS ALT1 TSL 1 (best) BASIC18.76■□□□□ 0.59
ERCC4Q92889 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC18.76■□□□□ 0.59
ERCC4Q92889 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
ERCC4Q92889 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC18.75■□□□□ 0.59
ERCC4Q92889 DYSF-207ENST00000409762 6727 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
ERCC4Q92889 DYSF-211ENST00000429174 6739 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
ERCC4Q92889 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC18.75■□□□□ 0.59
ERCC4Q92889 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC18.75■□□□□ 0.59
ERCC4Q92889 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
ERCC4Q92889 TCP10-201ENST00000366827 2250 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
ERCC4Q92889 AC006449.6-201ENST00000612330 2296 ntBASIC18.75■□□□□ 0.59
ERCC4Q92889 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC18.75■□□□□ 0.59
ERCC4Q92889 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
ERCC4Q92889 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
ERCC4Q92889 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC18.75■□□□□ 0.59
ERCC4Q92889 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC18.75■□□□□ 0.59
ERCC4Q92889 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
ERCC4Q92889 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC18.75■□□□□ 0.59
ERCC4Q92889 AC107918.2-201ENST00000530817 355 ntBASIC18.75■□□□□ 0.59
ERCC4Q92889 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC18.75■□□□□ 0.59
ERCC4Q92889 REXO1L6P-202ENST00000619970 1078 ntBASIC18.75■□□□□ 0.59
ERCC4Q92889 ABBA01031661.1-201ENST00000634362 1253 ntBASIC18.75■□□□□ 0.59
ERCC4Q92889 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC18.75■□□□□ 0.59
ERCC4Q92889 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC18.75■□□□□ 0.59
ERCC4Q92889 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
ERCC4Q92889 GTF2H1-203ENST00000453096 2707 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
ERCC4Q92889 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
ERCC4Q92889 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC18.75■□□□□ 0.59
ERCC4Q92889 JPH4-202ENST00000397118 4386 ntAPPRIS P2 TSL 1 (best) BASIC18.75■□□□□ 0.59
ERCC4Q92889 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
ERCC4Q92889 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
ERCC4Q92889 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC18.75■□□□□ 0.59
ERCC4Q92889 NBEAL2-205ENST00000450053 8827 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
ERCC4Q92889 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC18.75■□□□□ 0.59
ERCC4Q92889 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
ERCC4Q92889 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC18.74■□□□□ 0.59
ERCC4Q92889 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC18.74■□□□□ 0.59
ERCC4Q92889 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC18.74■□□□□ 0.59
ERCC4Q92889 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC18.74■□□□□ 0.59
ERCC4Q92889 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC18.74■□□□□ 0.59
ERCC4Q92889 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
ERCC4Q92889 SP100-205ENST00000409824 1802 ntTSL 5 BASIC18.74■□□□□ 0.59
ERCC4Q92889 TMUB2-212ENST00000589785 1918 ntAPPRIS P3 TSL 2 BASIC18.74■□□□□ 0.59
ERCC4Q92889 AL513477.1-201ENST00000602865 2407 ntBASIC18.74■□□□□ 0.59
ERCC4Q92889 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
ERCC4Q92889 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC18.74■□□□□ 0.59
ERCC4Q92889 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
ERCC4Q92889 PHLDB1-202ENST00000361417 5753 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
ERCC4Q92889 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
ERCC4Q92889 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
ERCC4Q92889 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
ERCC4Q92889 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC18.74■□□□□ 0.59
ERCC4Q92889 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
ERCC4Q92889 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC18.74■□□□□ 0.59
ERCC4Q92889 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
ERCC4Q92889 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
ERCC4Q92889 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC18.74■□□□□ 0.59
ERCC4Q92889 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
ERCC4Q92889 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
ERCC4Q92889 ARTN-206ENST00000472435 402 ntTSL 3 BASIC18.74■□□□□ 0.59
ERCC4Q92889 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC18.74■□□□□ 0.59
ERCC4Q92889 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC18.74■□□□□ 0.59
ERCC4Q92889 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC18.74■□□□□ 0.59
ERCC4Q92889 PLEKHA8-205ENST00000449726 7835 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
ERCC4Q92889 EXOC3L1-201ENST00000314586 2510 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
ERCC4Q92889 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC18.74■□□□□ 0.59
ERCC4Q92889 CCNA2-202ENST00000618014 2797 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
ERCC4Q92889 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
ERCC4Q92889 EPS8L2-201ENST00000318562 3148 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
ERCC4Q92889 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
ERCC4Q92889 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC18.74■□□□□ 0.59
ERCC4Q92889 SENP6-205ENST00000447266 6501 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
ERCC4Q92889 COL5A1-201ENST00000371817 8471 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
ERCC4Q92889 CKAP4-201ENST00000378026 3093 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
ERCC4Q92889 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
ERCC4Q92889 ESPNL-201ENST00000343063 4836 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
ERCC4Q92889 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
ERCC4Q92889 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
ERCC4Q92889 GNB4-201ENST00000232564 6434 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
ERCC4Q92889 CHST3-201ENST00000373115 6970 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
ERCC4Q92889 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
ERCC4Q92889 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC18.73■□□□□ 0.59
ERCC4Q92889 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC18.73■□□□□ 0.59
ERCC4Q92889 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
ERCC4Q92889 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
ERCC4Q92889 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
ERCC4Q92889 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC18.73■□□□□ 0.59
ERCC4Q92889 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC18.73■□□□□ 0.59
ERCC4Q92889 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
ERCC4Q92889 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
ERCC4Q92889 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
ERCC4Q92889 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC18.73■□□□□ 0.59
ERCC4Q92889 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC18.73■□□□□ 0.59
ERCC4Q92889 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC18.73■□□□□ 0.59
ERCC4Q92889 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC18.73■□□□□ 0.59
ERCC4Q92889 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC18.73■□□□□ 0.59
ERCC4Q92889 AC091304.2-201ENST00000564639 760 ntBASIC18.73■□□□□ 0.59
ERCC4Q92889 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC18.73■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 59.9 ms