Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
HDDC3Q8N4P3 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
HDDC3Q8N4P3 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
HDDC3Q8N4P3 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
HDDC3Q8N4P3 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
HDDC3Q8N4P3 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC16.5■□□□□ 0.23
HDDC3Q8N4P3 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC16.5■□□□□ 0.23
HDDC3Q8N4P3 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC16.5■□□□□ 0.23
HDDC3Q8N4P3 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
HDDC3Q8N4P3 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC16.5■□□□□ 0.23
HDDC3Q8N4P3 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
HDDC3Q8N4P3 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC16.5■□□□□ 0.23
HDDC3Q8N4P3 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC16.5■□□□□ 0.23
HDDC3Q8N4P3 SUFU-202ENST00000369902 5001 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
HDDC3Q8N4P3 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
HDDC3Q8N4P3 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
HDDC3Q8N4P3 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
HDDC3Q8N4P3 ADIRF-201ENST00000372013 917 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
HDDC3Q8N4P3 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC16.5■□□□□ 0.23
HDDC3Q8N4P3 COX5BP8-201ENST00000416911 349 ntBASIC16.5■□□□□ 0.23
HDDC3Q8N4P3 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC16.5■□□□□ 0.23
HDDC3Q8N4P3 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC16.5■□□□□ 0.23
HDDC3Q8N4P3 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC16.5■□□□□ 0.23
HDDC3Q8N4P3 NAA50-208ENST00000497255 789 ntTSL 5 BASIC16.5■□□□□ 0.23
HDDC3Q8N4P3 EEF1D-207ENST00000524624 1084 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
HDDC3Q8N4P3 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC16.5■□□□□ 0.23
HDDC3Q8N4P3 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC16.5■□□□□ 0.23
HDDC3Q8N4P3 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC16.5■□□□□ 0.23
HDDC3Q8N4P3 MYMX-202ENST00000576476 682 ntAPPRIS P1 TSL 3 BASIC16.5■□□□□ 0.23
HDDC3Q8N4P3 NEO1-202ENST00000339362 7342 ntAPPRIS P3 TSL 5 BASIC16.5■□□□□ 0.23
HDDC3Q8N4P3 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC16.5■□□□□ 0.23
HDDC3Q8N4P3 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC16.5■□□□□ 0.23
HDDC3Q8N4P3 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
HDDC3Q8N4P3 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC16.5■□□□□ 0.23
HDDC3Q8N4P3 MAPT-201ENST00000262410 6762 ntAPPRIS P4 TSL 1 (best) BASIC16.5■□□□□ 0.23
HDDC3Q8N4P3 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
HDDC3Q8N4P3 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
HDDC3Q8N4P3 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
HDDC3Q8N4P3 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC16.5■□□□□ 0.23
HDDC3Q8N4P3 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC16.5■□□□□ 0.23
HDDC3Q8N4P3 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
HDDC3Q8N4P3 HLF-201ENST00000226067 5547 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
HDDC3Q8N4P3 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
HDDC3Q8N4P3 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
HDDC3Q8N4P3 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
HDDC3Q8N4P3 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC16.49■□□□□ 0.23
HDDC3Q8N4P3 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
HDDC3Q8N4P3 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
HDDC3Q8N4P3 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
HDDC3Q8N4P3 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
HDDC3Q8N4P3 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
HDDC3Q8N4P3 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
HDDC3Q8N4P3 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
HDDC3Q8N4P3 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
HDDC3Q8N4P3 CD164L2-203ENST00000374030 993 ntAPPRIS ALT1 TSL 5 BASIC16.49■□□□□ 0.23
HDDC3Q8N4P3 C9orf24-204ENST00000379127 596 ntTSL 3 BASIC16.49■□□□□ 0.23
HDDC3Q8N4P3 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
HDDC3Q8N4P3 WDR45-208ENST00000396681 1146 ntTSL 5 BASIC16.49■□□□□ 0.23
HDDC3Q8N4P3 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC16.49■□□□□ 0.23
HDDC3Q8N4P3 VMO1-203ENST00000416307 712 ntTSL 2 BASIC16.49■□□□□ 0.23
HDDC3Q8N4P3 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC16.49■□□□□ 0.23
HDDC3Q8N4P3 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC16.49■□□□□ 0.23
HDDC3Q8N4P3 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC16.49■□□□□ 0.23
HDDC3Q8N4P3 MTND6P24-201ENST00000440466 518 ntBASIC16.49■□□□□ 0.23
HDDC3Q8N4P3 ATP5G2P4-201ENST00000442175 420 ntBASIC16.49■□□□□ 0.23
HDDC3Q8N4P3 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC16.49■□□□□ 0.23
HDDC3Q8N4P3 SATB1-217ENST00000493952 626 ntTSL 3 BASIC16.49■□□□□ 0.23
HDDC3Q8N4P3 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC16.49■□□□□ 0.23
HDDC3Q8N4P3 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
HDDC3Q8N4P3 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
HDDC3Q8N4P3 MAX-210ENST00000555419 765 ntTSL 5 BASIC16.49■□□□□ 0.23
HDDC3Q8N4P3 AC138474.1-201ENST00000586630 523 ntTSL 3 BASIC16.49■□□□□ 0.23
HDDC3Q8N4P3 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC16.49■□□□□ 0.23
HDDC3Q8N4P3 FHL2-212ENST00000607522 759 ntTSL 2 BASIC16.49■□□□□ 0.23
HDDC3Q8N4P3 SPDYE12P-201ENST00000618416 771 ntBASIC16.49■□□□□ 0.23
HDDC3Q8N4P3 BCRP3-202ENST00000621462 1021 ntTSL 3 BASIC16.49■□□□□ 0.23
HDDC3Q8N4P3 AC100757.3-201ENST00000622361 1406 ntBASIC16.49■□□□□ 0.23
HDDC3Q8N4P3 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC16.49■□□□□ 0.23
HDDC3Q8N4P3 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
HDDC3Q8N4P3 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
HDDC3Q8N4P3 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
HDDC3Q8N4P3 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
HDDC3Q8N4P3 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
HDDC3Q8N4P3 AL035456.1-201ENST00000456064 1369 ntBASIC16.49■□□□□ 0.23
HDDC3Q8N4P3 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC16.49■□□□□ 0.23
HDDC3Q8N4P3 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
HDDC3Q8N4P3 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
HDDC3Q8N4P3 AL603756.1-201ENST00000606511 2163 ntBASIC16.48■□□□□ 0.23
HDDC3Q8N4P3 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
HDDC3Q8N4P3 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC16.48■□□□□ 0.23
HDDC3Q8N4P3 F11R-206ENST00000621309 4770 ntTSL 5 BASIC16.48■□□□□ 0.23
HDDC3Q8N4P3 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC16.48■□□□□ 0.23
HDDC3Q8N4P3 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
HDDC3Q8N4P3 CU639417.3-201ENST00000624240 1404 ntBASIC16.48■□□□□ 0.23
HDDC3Q8N4P3 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
HDDC3Q8N4P3 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC16.48■□□□□ 0.23
HDDC3Q8N4P3 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC16.48■□□□□ 0.23
HDDC3Q8N4P3 DICER1-AS1-202ENST00000439819 810 ntTSL 3 BASIC16.48■□□□□ 0.23
HDDC3Q8N4P3 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
HDDC3Q8N4P3 PSEN2-206ENST00000472139 1163 ntTSL 5 BASIC16.48■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 40.9 ms