Protein–RNA interactions for Protein: Q8N1M1

BEST3, Bestrophin-3, humanhuman

Predictions only

Length 668 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3Q8N1M1 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC15.33■□□□□ 0.04
BEST3Q8N1M1 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC15.33■□□□□ 0.04
BEST3Q8N1M1 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.04
BEST3Q8N1M1 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC15.33■□□□□ 0.04
BEST3Q8N1M1 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
BEST3Q8N1M1 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
BEST3Q8N1M1 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
BEST3Q8N1M1 NARF-206ENST00000457415 1668 ntTSL 5 BASIC15.33■□□□□ 0.04
BEST3Q8N1M1 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.04
BEST3Q8N1M1 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC15.33■□□□□ 0.04
BEST3Q8N1M1 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC15.33■□□□□ 0.04
BEST3Q8N1M1 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
BEST3Q8N1M1 CD99-202ENST00000381180 530 ntTSL 2 BASIC15.33■□□□□ 0.04
BEST3Q8N1M1 PTMS-202ENST00000389462 773 ntTSL 2 BASIC15.33■□□□□ 0.04
BEST3Q8N1M1 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC15.33■□□□□ 0.04
BEST3Q8N1M1 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC15.33■□□□□ 0.04
BEST3Q8N1M1 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC15.33■□□□□ 0.04
BEST3Q8N1M1 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC15.33■□□□□ 0.04
BEST3Q8N1M1 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC15.33■□□□□ 0.04
BEST3Q8N1M1 AC067863.1-201ENST00000494933 530 ntBASIC15.33■□□□□ 0.04
BEST3Q8N1M1 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC15.33■□□□□ 0.04
BEST3Q8N1M1 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
BEST3Q8N1M1 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.04
BEST3Q8N1M1 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC15.33■□□□□ 0.04
BEST3Q8N1M1 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC15.33■□□□□ 0.04
BEST3Q8N1M1 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC15.33■□□□□ 0.04
BEST3Q8N1M1 AC011467.4-201ENST00000594891 528 ntBASIC15.33■□□□□ 0.04
BEST3Q8N1M1 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC15.33■□□□□ 0.04
BEST3Q8N1M1 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
BEST3Q8N1M1 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
BEST3Q8N1M1 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC15.33■□□□□ 0.04
BEST3Q8N1M1 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
BEST3Q8N1M1 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC15.33■□□□□ 0.04
BEST3Q8N1M1 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
BEST3Q8N1M1 DAB2IP-205ENST00000408936 6784 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.04
BEST3Q8N1M1 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC15.33■□□□□ 0.04
BEST3Q8N1M1 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
BEST3Q8N1M1 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
BEST3Q8N1M1 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.04
BEST3Q8N1M1 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC15.33■□□□□ 0.04
BEST3Q8N1M1 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC15.33■□□□□ 0.04
BEST3Q8N1M1 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
BEST3Q8N1M1 KCNC1-202ENST00000379472 7965 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
BEST3Q8N1M1 AHRR-201ENST00000316418 5661 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
BEST3Q8N1M1 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
BEST3Q8N1M1 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
BEST3Q8N1M1 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC15.32■□□□□ 0.04
BEST3Q8N1M1 AC006277.1-201ENST00000624348 1610 ntBASIC15.32■□□□□ 0.04
BEST3Q8N1M1 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
BEST3Q8N1M1 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
BEST3Q8N1M1 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
BEST3Q8N1M1 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
BEST3Q8N1M1 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC15.32■□□□□ 0.04
BEST3Q8N1M1 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC15.32■□□□□ 0.04
BEST3Q8N1M1 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
BEST3Q8N1M1 CCDC187-205ENST00000638797 10126 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
BEST3Q8N1M1 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
BEST3Q8N1M1 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
BEST3Q8N1M1 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
BEST3Q8N1M1 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
BEST3Q8N1M1 WDR53-203ENST00000429115 683 ntTSL 2 BASIC15.32■□□□□ 0.04
BEST3Q8N1M1 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC15.32■□□□□ 0.04
BEST3Q8N1M1 WDR53-204ENST00000433160 887 ntTSL 5 BASIC15.32■□□□□ 0.04
BEST3Q8N1M1 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC15.32■□□□□ 0.04
BEST3Q8N1M1 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
BEST3Q8N1M1 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC15.32■□□□□ 0.04
BEST3Q8N1M1 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC15.32■□□□□ 0.04
BEST3Q8N1M1 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC15.32■□□□□ 0.04
BEST3Q8N1M1 AC026150.2-201ENST00000564693 1156 ntBASIC15.32■□□□□ 0.04
BEST3Q8N1M1 AL138918.1-201ENST00000568306 659 ntBASIC15.32■□□□□ 0.04
BEST3Q8N1M1 AP000842.3-202ENST00000569238 1080 ntBASIC15.32■□□□□ 0.04
BEST3Q8N1M1 AC015911.4-201ENST00000588022 1070 ntBASIC15.32■□□□□ 0.04
BEST3Q8N1M1 SIGLEC29P-201ENST00000599873 1114 ntBASIC15.32■□□□□ 0.04
BEST3Q8N1M1 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC15.32■□□□□ 0.04
BEST3Q8N1M1 TSPOAP1-202ENST00000343736 5947 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
BEST3Q8N1M1 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
BEST3Q8N1M1 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
BEST3Q8N1M1 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
BEST3Q8N1M1 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
BEST3Q8N1M1 AMN1-201ENST00000281471 2110 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
BEST3Q8N1M1 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
BEST3Q8N1M1 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC15.32■□□□□ 0.04
BEST3Q8N1M1 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
BEST3Q8N1M1 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC15.32■□□□□ 0.04
BEST3Q8N1M1 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC15.32■□□□□ 0.04
BEST3Q8N1M1 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC15.32■□□□□ 0.04
BEST3Q8N1M1 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
BEST3Q8N1M1 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
BEST3Q8N1M1 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
BEST3Q8N1M1 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
BEST3Q8N1M1 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
BEST3Q8N1M1 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
BEST3Q8N1M1 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC15.31■□□□□ 0.04
BEST3Q8N1M1 PCNX2-201ENST00000258229 7518 ntAPPRIS P2 TSL 5 BASIC15.31■□□□□ 0.04
BEST3Q8N1M1 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
BEST3Q8N1M1 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
BEST3Q8N1M1 ARMC5-203ENST00000457010 4844 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
BEST3Q8N1M1 FRMD5-202ENST00000417257 5011 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
BEST3Q8N1M1 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
BEST3Q8N1M1 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 41 ms