Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC13.85□□□□□ -0.19
CCDC28AQ8IWP9 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
CCDC28AQ8IWP9 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC13.85□□□□□ -0.19
CCDC28AQ8IWP9 ELP6-205ENST00000439305 880 ntTSL 2 BASIC13.85□□□□□ -0.19
CCDC28AQ8IWP9 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC13.85□□□□□ -0.19
CCDC28AQ8IWP9 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC13.85□□□□□ -0.19
CCDC28AQ8IWP9 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC13.85□□□□□ -0.19
CCDC28AQ8IWP9 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC13.85□□□□□ -0.19
CCDC28AQ8IWP9 AC008622.2-201ENST00000617006 1229 ntBASIC13.85□□□□□ -0.19
CCDC28AQ8IWP9 AL359736.2-201ENST00000621992 437 ntBASIC13.85□□□□□ -0.19
CCDC28AQ8IWP9 CR392000.1-201ENST00000624770 1228 ntBASIC13.85□□□□□ -0.19
CCDC28AQ8IWP9 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC13.85□□□□□ -0.19
CCDC28AQ8IWP9 STK17B-201ENST00000263955 5287 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
CCDC28AQ8IWP9 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
CCDC28AQ8IWP9 ASPG-206ENST00000551177 4851 ntAPPRIS P2 TSL 1 (best) BASIC13.85□□□□□ -0.19
CCDC28AQ8IWP9 LDLRAD4-205ENST00000585931 2118 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
CCDC28AQ8IWP9 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC13.85□□□□□ -0.19
CCDC28AQ8IWP9 OS9-201ENST00000257966 2505 ntAPPRIS ALT2 TSL 2 BASIC13.85□□□□□ -0.19
CCDC28AQ8IWP9 B4GALNT3-201ENST00000266383 5068 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
CCDC28AQ8IWP9 SEPT9-220ENST00000588690 2919 ntTSL 5 BASIC13.84□□□□□ -0.19
CCDC28AQ8IWP9 NOP9-201ENST00000267425 6033 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CCDC28AQ8IWP9 MBD1-201ENST00000269468 3259 ntAPPRIS P3 TSL 5 BASIC13.84□□□□□ -0.19
CCDC28AQ8IWP9 HOXC11-202ENST00000546378 3261 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CCDC28AQ8IWP9 MAMLD1-203ENST00000370401 4854 ntAPPRIS P3 TSL 5 BASIC13.84□□□□□ -0.19
CCDC28AQ8IWP9 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
CCDC28AQ8IWP9 MINDY1-207ENST00000622754 2637 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CCDC28AQ8IWP9 LIG1-203ENST00000536218 3179 ntAPPRIS ALT2 TSL 2 BASIC13.84□□□□□ -0.19
CCDC28AQ8IWP9 CIC-207ENST00000575354 5473 ntAPPRIS P2 TSL 1 (best) BASIC13.84□□□□□ -0.19
CCDC28AQ8IWP9 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
CCDC28AQ8IWP9 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC13.84□□□□□ -0.19
CCDC28AQ8IWP9 TMTC1-207ENST00000552618 3915 ntTSL 5 BASIC13.84□□□□□ -0.19
CCDC28AQ8IWP9 DNAJC27-207ENST00000534855 4831 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
CCDC28AQ8IWP9 RPN2-202ENST00000373622 2348 ntTSL 2 BASIC13.84□□□□□ -0.19
CCDC28AQ8IWP9 ZFYVE28-201ENST00000290974 4131 ntAPPRIS P3 TSL 1 (best) BASIC13.84□□□□□ -0.19
CCDC28AQ8IWP9 PPP4R3B-205ENST00000616288 4310 ntAPPRIS ALT1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CCDC28AQ8IWP9 LINC00926-201ENST00000501726 2530 ntTSL 2 BASIC13.84□□□□□ -0.19
CCDC28AQ8IWP9 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CCDC28AQ8IWP9 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CCDC28AQ8IWP9 RASA3-201ENST00000334062 4191 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CCDC28AQ8IWP9 STIP1-203ENST00000358794 2743 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
CCDC28AQ8IWP9 HIC2-202ENST00000407598 4734 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CCDC28AQ8IWP9 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
CCDC28AQ8IWP9 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
CCDC28AQ8IWP9 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
CCDC28AQ8IWP9 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC13.84□□□□□ -0.19
CCDC28AQ8IWP9 UBE2SP1-201ENST00000450587 669 ntBASIC13.84□□□□□ -0.19
CCDC28AQ8IWP9 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
CCDC28AQ8IWP9 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
CCDC28AQ8IWP9 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC13.84□□□□□ -0.19
CCDC28AQ8IWP9 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
CCDC28AQ8IWP9 DUTP2-201ENST00000519164 463 ntBASIC13.84□□□□□ -0.19
CCDC28AQ8IWP9 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC13.84□□□□□ -0.19
CCDC28AQ8IWP9 RPS15-203ENST00000586096 570 ntTSL 2 BASIC13.84□□□□□ -0.19
CCDC28AQ8IWP9 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
CCDC28AQ8IWP9 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CCDC28AQ8IWP9 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CCDC28AQ8IWP9 TMEM30A-201ENST00000230461 4594 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CCDC28AQ8IWP9 PITRM1-206ENST00000451104 3183 ntTSL 2 BASIC13.84□□□□□ -0.19
CCDC28AQ8IWP9 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC13.84□□□□□ -0.19
CCDC28AQ8IWP9 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC13.84□□□□□ -0.19
CCDC28AQ8IWP9 SLC38A10-202ENST00000374759 4300 ntAPPRIS ALT2 TSL 5 BASIC13.84□□□□□ -0.19
CCDC28AQ8IWP9 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CCDC28AQ8IWP9 CDH23-202ENST00000299366 3954 ntTSL 5 BASIC13.84□□□□□ -0.19
CCDC28AQ8IWP9 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC13.84□□□□□ -0.19
CCDC28AQ8IWP9 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CCDC28AQ8IWP9 SEMA4F-210ENST00000611975 6007 ntTSL 5 BASIC13.84□□□□□ -0.19
CCDC28AQ8IWP9 KCNH6-202ENST00000456941 2928 ntTSL 5 BASIC13.84□□□□□ -0.19
CCDC28AQ8IWP9 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
CCDC28AQ8IWP9 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
CCDC28AQ8IWP9 FLII-201ENST00000327031 4338 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
CCDC28AQ8IWP9 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC13.83□□□□□ -0.19
CCDC28AQ8IWP9 UBE3B-202ENST00000342494 5722 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
CCDC28AQ8IWP9 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
CCDC28AQ8IWP9 TMEM115-201ENST00000266025 2197 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
CCDC28AQ8IWP9 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC13.83□□□□□ -0.19
CCDC28AQ8IWP9 FGFR1-202ENST00000335922 4157 ntTSL 1 (best) BASIC13.83□□□□□ -0.19
CCDC28AQ8IWP9 TET3-201ENST00000305799 5174 ntTSL 5 BASIC13.83□□□□□ -0.19
CCDC28AQ8IWP9 MEF2D-201ENST00000348159 5965 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.19
CCDC28AQ8IWP9 FBXL19-204ENST00000471231 3641 ntTSL 2 BASIC13.83□□□□□ -0.19
CCDC28AQ8IWP9 NDRG4-255ENST00000570248 3207 ntAPPRIS P2 TSL 1 (best) BASIC13.83□□□□□ -0.19
CCDC28AQ8IWP9 HNRNPU-226ENST00000640218 6858 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.19
CCDC28AQ8IWP9 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC13.83□□□□□ -0.2
CCDC28AQ8IWP9 EPHX2-209ENST00000521780 2038 ntTSL 2 BASIC13.83□□□□□ -0.2
CCDC28AQ8IWP9 NEDD4-202ENST00000435532 5869 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CCDC28AQ8IWP9 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CCDC28AQ8IWP9 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC13.83□□□□□ -0.2
CCDC28AQ8IWP9 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
CCDC28AQ8IWP9 TIE1-201ENST00000372476 3882 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CCDC28AQ8IWP9 TGOLN2-203ENST00000398263 6138 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
CCDC28AQ8IWP9 PTBP1-221ENST00000635647 3691 ntTSL 5 BASIC13.83□□□□□ -0.2
CCDC28AQ8IWP9 KCTD7-201ENST00000275532 4795 ntTSL 4 BASIC13.83□□□□□ -0.2
CCDC28AQ8IWP9 ZKSCAN2-201ENST00000328086 7523 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CCDC28AQ8IWP9 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC13.83□□□□□ -0.2
CCDC28AQ8IWP9 GABPB1-201ENST00000220429 2726 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
CCDC28AQ8IWP9 C1orf159-202ENST00000379320 2324 ntAPPRIS ALT2 TSL 2 BASIC13.83□□□□□ -0.2
CCDC28AQ8IWP9 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CCDC28AQ8IWP9 PLK2-201ENST00000274289 2960 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CCDC28AQ8IWP9 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CCDC28AQ8IWP9 ACP7-201ENST00000331256 2966 ntAPPRIS P1 TSL 2 BASIC13.83□□□□□ -0.2
CCDC28AQ8IWP9 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC13.83□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 32.8 ms