Protein–RNA interactions for Protein: Q6ZMZ3

SYNE3, Nesprin-3, humanhuman

Predictions only

Length 975 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3Q6ZMZ3 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
SYNE3Q6ZMZ3 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SYNE3Q6ZMZ3 LYNX1-206ENST00000621401 4537 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SYNE3Q6ZMZ3 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SYNE3Q6ZMZ3 LINC01144-201ENST00000626198 1710 ntBASIC19.42■□□□□ 0.7
SYNE3Q6ZMZ3 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
SYNE3Q6ZMZ3 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
SYNE3Q6ZMZ3 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SYNE3Q6ZMZ3 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
SYNE3Q6ZMZ3 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
SYNE3Q6ZMZ3 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC19.42■□□□□ 0.7
SYNE3Q6ZMZ3 NTRK2-205ENST00000376208 8178 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
SYNE3Q6ZMZ3 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SYNE3Q6ZMZ3 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
SYNE3Q6ZMZ3 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
SYNE3Q6ZMZ3 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC19.42■□□□□ 0.7
SYNE3Q6ZMZ3 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
SYNE3Q6ZMZ3 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC19.42■□□□□ 0.7
SYNE3Q6ZMZ3 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SYNE3Q6ZMZ3 PMP22-202ENST00000395936 816 ntTSL 3 BASIC19.42■□□□□ 0.7
SYNE3Q6ZMZ3 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC19.42■□□□□ 0.7
SYNE3Q6ZMZ3 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
SYNE3Q6ZMZ3 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
SYNE3Q6ZMZ3 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC19.42■□□□□ 0.7
SYNE3Q6ZMZ3 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC19.42■□□□□ 0.7
SYNE3Q6ZMZ3 MTDHP5-201ENST00000598980 586 ntBASIC19.42■□□□□ 0.7
SYNE3Q6ZMZ3 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
SYNE3Q6ZMZ3 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
SYNE3Q6ZMZ3 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC19.42■□□□□ 0.7
SYNE3Q6ZMZ3 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
SYNE3Q6ZMZ3 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC19.42■□□□□ 0.7
SYNE3Q6ZMZ3 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SYNE3Q6ZMZ3 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC19.42■□□□□ 0.7
SYNE3Q6ZMZ3 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
SYNE3Q6ZMZ3 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
SYNE3Q6ZMZ3 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC19.41■□□□□ 0.7
SYNE3Q6ZMZ3 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
SYNE3Q6ZMZ3 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC19.41■□□□□ 0.7
SYNE3Q6ZMZ3 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SYNE3Q6ZMZ3 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC19.41■□□□□ 0.7
SYNE3Q6ZMZ3 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SYNE3Q6ZMZ3 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
SYNE3Q6ZMZ3 XKR7-201ENST00000562532 7844 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SYNE3Q6ZMZ3 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
SYNE3Q6ZMZ3 FRMPD4-201ENST00000380682 8465 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
SYNE3Q6ZMZ3 MCCD1P2-201ENST00000423228 335 ntBASIC19.41■□□□□ 0.7
SYNE3Q6ZMZ3 AC004832.2-201ENST00000426397 482 ntBASIC19.41■□□□□ 0.7
SYNE3Q6ZMZ3 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC19.41■□□□□ 0.7
SYNE3Q6ZMZ3 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC19.41■□□□□ 0.7
SYNE3Q6ZMZ3 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
SYNE3Q6ZMZ3 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC19.41■□□□□ 0.7
SYNE3Q6ZMZ3 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SYNE3Q6ZMZ3 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SYNE3Q6ZMZ3 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC19.41■□□□□ 0.7
SYNE3Q6ZMZ3 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC19.41■□□□□ 0.7
SYNE3Q6ZMZ3 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC19.41■□□□□ 0.7
SYNE3Q6ZMZ3 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC19.41■□□□□ 0.7
SYNE3Q6ZMZ3 EVPL-201ENST00000301607 6614 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SYNE3Q6ZMZ3 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
SYNE3Q6ZMZ3 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SYNE3Q6ZMZ3 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
SYNE3Q6ZMZ3 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC19.41■□□□□ 0.7
SYNE3Q6ZMZ3 AC018695.7-201ENST00000624587 2492 ntBASIC19.41■□□□□ 0.7
SYNE3Q6ZMZ3 SYT1-201ENST00000261205 4808 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
SYNE3Q6ZMZ3 LRRC47-201ENST00000378251 4310 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SYNE3Q6ZMZ3 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC19.4■□□□□ 0.7
SYNE3Q6ZMZ3 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC19.4■□□□□ 0.7
SYNE3Q6ZMZ3 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
SYNE3Q6ZMZ3 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
SYNE3Q6ZMZ3 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC19.4■□□□□ 0.7
SYNE3Q6ZMZ3 AL662844.4-201ENST00000606367 2838 ntBASIC19.4■□□□□ 0.7
SYNE3Q6ZMZ3 CCNY-202ENST00000339497 4630 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
SYNE3Q6ZMZ3 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
SYNE3Q6ZMZ3 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
SYNE3Q6ZMZ3 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC19.4■□□□□ 0.7
SYNE3Q6ZMZ3 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
SYNE3Q6ZMZ3 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SYNE3Q6ZMZ3 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SYNE3Q6ZMZ3 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
SYNE3Q6ZMZ3 DIDO1-201ENST00000266070 8574 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
SYNE3Q6ZMZ3 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
SYNE3Q6ZMZ3 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC19.4■□□□□ 0.7
SYNE3Q6ZMZ3 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC19.4■□□□□ 0.7
SYNE3Q6ZMZ3 KRT18P34-201ENST00000488218 1270 ntBASIC19.4■□□□□ 0.7
SYNE3Q6ZMZ3 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC19.4■□□□□ 0.7
SYNE3Q6ZMZ3 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC19.4■□□□□ 0.7
SYNE3Q6ZMZ3 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC19.4■□□□□ 0.7
SYNE3Q6ZMZ3 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC19.4■□□□□ 0.7
SYNE3Q6ZMZ3 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
SYNE3Q6ZMZ3 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
SYNE3Q6ZMZ3 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SYNE3Q6ZMZ3 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
SYNE3Q6ZMZ3 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SYNE3Q6ZMZ3 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SYNE3Q6ZMZ3 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SYNE3Q6ZMZ3 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
SYNE3Q6ZMZ3 SETD1B-201ENST00000267197 5772 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
SYNE3Q6ZMZ3 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
SYNE3Q6ZMZ3 RB1CC1-202ENST00000435644 6614 ntAPPRIS ALT1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SYNE3Q6ZMZ3 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 44.3 ms