Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC17.67■□□□□ 0.42
VCPP55072 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC17.67■□□□□ 0.42
VCPP55072 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC17.67■□□□□ 0.42
VCPP55072 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
VCPP55072 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
VCPP55072 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
VCPP55072 WRB-204ENST00000398753 699 ntTSL 3 BASIC17.67■□□□□ 0.42
VCPP55072 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
VCPP55072 AL136311.1-206ENST00000416069 899 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
VCPP55072 ARSEP1-201ENST00000420443 635 ntBASIC17.67■□□□□ 0.42
VCPP55072 FAM58DP-201ENST00000428076 619 ntBASIC17.67■□□□□ 0.42
VCPP55072 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC17.67■□□□□ 0.42
VCPP55072 MACROD2-AS1-201ENST00000439451 1230 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
VCPP55072 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
VCPP55072 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC17.67■□□□□ 0.42
VCPP55072 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC17.67■□□□□ 0.42
VCPP55072 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC17.67■□□□□ 0.42
VCPP55072 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
VCPP55072 ACAP1-208ENST00000574499 412 ntTSL 2 BASIC17.67■□□□□ 0.42
VCPP55072 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC17.67■□□□□ 0.42
VCPP55072 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC17.67■□□□□ 0.42
VCPP55072 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC17.67■□□□□ 0.42
VCPP55072 PLCB1-201ENST00000338037 7092 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
VCPP55072 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
VCPP55072 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC17.67■□□□□ 0.42
VCPP55072 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
VCPP55072 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
VCPP55072 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
VCPP55072 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
VCPP55072 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
VCPP55072 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC17.67■□□□□ 0.42
VCPP55072 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
VCPP55072 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC17.66■□□□□ 0.42
VCPP55072 PTEN-201ENST00000371953 9027 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
VCPP55072 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
VCPP55072 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
VCPP55072 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
VCPP55072 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC17.66■□□□□ 0.42
VCPP55072 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
VCPP55072 ALG5-201ENST00000239891 1154 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
VCPP55072 VCX2-201ENST00000317103 815 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
VCPP55072 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC17.66■□□□□ 0.42
VCPP55072 AL355306.1-201ENST00000415580 579 ntBASIC17.66■□□□□ 0.42
VCPP55072 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC17.66■□□□□ 0.42
VCPP55072 KRT18P32-201ENST00000424695 1287 ntBASIC17.66■□□□□ 0.42
VCPP55072 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC17.66■□□□□ 0.42
VCPP55072 RN7SL692P-201ENST00000464677 288 ntBASIC17.66■□□□□ 0.42
VCPP55072 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
VCPP55072 ATF7-204ENST00000548118 774 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
VCPP55072 GNG2-209ENST00000555472 908 ntAPPRIS P1 TSL 3 BASIC17.66■□□□□ 0.42
VCPP55072 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC17.66■□□□□ 0.42
VCPP55072 AP001059.3-201ENST00000619053 235 ntBASIC17.66■□□□□ 0.42
VCPP55072 SRP9-204ENST00000619790 377 ntTSL 2 BASIC17.66■□□□□ 0.42
VCPP55072 MIR6799-201ENST00000620297 69 ntBASIC17.66■□□□□ 0.42
VCPP55072 VCX-203ENST00000620630 812 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
VCPP55072 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
VCPP55072 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
VCPP55072 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
VCPP55072 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
VCPP55072 AC018695.7-201ENST00000624587 2492 ntBASIC17.66■□□□□ 0.42
VCPP55072 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
VCPP55072 TUBB8P12-201ENST00000308911 1335 ntBASIC17.66■□□□□ 0.42
VCPP55072 TUBB7P-202ENST00000428444 1305 ntBASIC17.66■□□□□ 0.42
VCPP55072 TUBB8P7-204ENST00000567960 1332 ntBASIC17.66■□□□□ 0.42
VCPP55072 BEND4-202ENST00000504360 8692 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
VCPP55072 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
VCPP55072 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
VCPP55072 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
VCPP55072 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
VCPP55072 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
VCPP55072 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC17.66■□□□□ 0.42
VCPP55072 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
VCPP55072 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
VCPP55072 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC17.65■□□□□ 0.42
VCPP55072 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC17.65■□□□□ 0.42
VCPP55072 ADARB1-202ENST00000360697 6604 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
VCPP55072 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC17.65■□□□□ 0.42
VCPP55072 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC17.65■□□□□ 0.42
VCPP55072 QRICH1-201ENST00000357496 3083 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
VCPP55072 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC17.65■□□□□ 0.42
VCPP55072 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
VCPP55072 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC17.65■□□□□ 0.42
VCPP55072 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
VCPP55072 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
VCPP55072 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
VCPP55072 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC17.65■□□□□ 0.42
VCPP55072 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC17.65■□□□□ 0.42
VCPP55072 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC17.65■□□□□ 0.42
VCPP55072 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC17.65■□□□□ 0.42
VCPP55072 AL592309.1-201ENST00000443127 649 ntBASIC17.65■□□□□ 0.42
VCPP55072 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC17.65■□□□□ 0.42
VCPP55072 SPDYE11-202ENST00000450699 704 ntBASIC17.65■□□□□ 0.42
VCPP55072 GNG4-205ENST00000484517 684 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
VCPP55072 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC17.65■□□□□ 0.42
VCPP55072 BAD-207ENST00000544785 525 ntTSL 3 BASIC17.65■□□□□ 0.42
VCPP55072 SPDYE9P-201ENST00000570642 692 ntBASIC17.65■□□□□ 0.42
VCPP55072 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
VCPP55072 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC17.65■□□□□ 0.42
VCPP55072 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC17.65■□□□□ 0.42
VCPP55072 SPDYE10P-202ENST00000612005 668 ntBASIC17.65■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms