Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
RFX3P48380 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC15.57■□□□□ 0.08
RFX3P48380 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
RFX3P48380 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC15.57■□□□□ 0.08
RFX3P48380 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC15.57■□□□□ 0.08
RFX3P48380 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC15.57■□□□□ 0.08
RFX3P48380 IGHV3-22-201ENST00000520721 359 ntBASIC15.57■□□□□ 0.08
RFX3P48380 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC15.57■□□□□ 0.08
RFX3P48380 Z83851.2-201ENST00000609564 659 ntBASIC15.57■□□□□ 0.08
RFX3P48380 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
RFX3P48380 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC15.57■□□□□ 0.08
RFX3P48380 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC15.57■□□□□ 0.08
RFX3P48380 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
RFX3P48380 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC15.57■□□□□ 0.08
RFX3P48380 SPOCK1-202ENST00000394945 4846 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
RFX3P48380 AC129492.6-201ENST00000611383 1305 ntBASIC15.57■□□□□ 0.08
RFX3P48380 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC15.57■□□□□ 0.08
RFX3P48380 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC15.57■□□□□ 0.08
RFX3P48380 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC15.57■□□□□ 0.08
RFX3P48380 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
RFX3P48380 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
RFX3P48380 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC15.57■□□□□ 0.08
RFX3P48380 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
RFX3P48380 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC15.57■□□□□ 0.08
RFX3P48380 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC15.57■□□□□ 0.08
RFX3P48380 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC15.57■□□□□ 0.08
RFX3P48380 CBX7-201ENST00000216133 4081 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
RFX3P48380 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
RFX3P48380 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC15.57■□□□□ 0.08
RFX3P48380 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC15.56■□□□□ 0.08
RFX3P48380 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC15.56■□□□□ 0.08
RFX3P48380 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC15.56■□□□□ 0.08
RFX3P48380 AL671710.1-201ENST00000610245 2349 ntBASIC15.56■□□□□ 0.08
RFX3P48380 RPTOR-202ENST00000544334 5734 ntTSL 5 BASIC15.56■□□□□ 0.08
RFX3P48380 ABLIM3-206ENST00000506113 4569 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
RFX3P48380 TIMP3-201ENST00000266085 4603 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
RFX3P48380 PPP1R26-204ENST00000604351 4640 ntAPPRIS P1 TSL 3 BASIC15.56■□□□□ 0.08
RFX3P48380 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC15.56■□□□□ 0.08
RFX3P48380 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
RFX3P48380 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC15.56■□□□□ 0.08
RFX3P48380 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
RFX3P48380 AC007967.2-201ENST00000432613 625 ntBASIC15.56■□□□□ 0.08
RFX3P48380 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC15.56■□□□□ 0.08
RFX3P48380 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC15.56■□□□□ 0.08
RFX3P48380 RPL13AP23-201ENST00000480739 586 ntBASIC15.56■□□□□ 0.08
RFX3P48380 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC15.56■□□□□ 0.08
RFX3P48380 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC15.56■□□□□ 0.08
RFX3P48380 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC15.56■□□□□ 0.08
RFX3P48380 OR7E47P-204ENST00000575924 449 ntBASIC15.56■□□□□ 0.08
RFX3P48380 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC15.56■□□□□ 0.08
RFX3P48380 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC15.56■□□□□ 0.08
RFX3P48380 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC15.56■□□□□ 0.08
RFX3P48380 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC15.56■□□□□ 0.08
RFX3P48380 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
RFX3P48380 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC15.56■□□□□ 0.08
RFX3P48380 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC15.56■□□□□ 0.08
RFX3P48380 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
RFX3P48380 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
RFX3P48380 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
RFX3P48380 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC15.56■□□□□ 0.08
RFX3P48380 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
RFX3P48380 LINC00895-201ENST00000629028 1637 ntBASIC15.56■□□□□ 0.08
RFX3P48380 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC15.56■□□□□ 0.08
RFX3P48380 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
RFX3P48380 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
RFX3P48380 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC15.56■□□□□ 0.08
RFX3P48380 AMT-206ENST00000458307 1860 ntTSL 2 BASIC15.56■□□□□ 0.08
RFX3P48380 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC15.56■□□□□ 0.08
RFX3P48380 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
RFX3P48380 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC15.56■□□□□ 0.08
RFX3P48380 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
RFX3P48380 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
RFX3P48380 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
RFX3P48380 MBD1-224ENST00000591416 4905 ntAPPRIS P3 TSL 5 BASIC15.56■□□□□ 0.08
RFX3P48380 UBE3B-202ENST00000342494 5722 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
RFX3P48380 TRAPPC8-201ENST00000283351 6226 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
RFX3P48380 TBC1D16-209ENST00000576768 6342 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
RFX3P48380 AFAP1-204ENST00000420658 7768 ntAPPRIS ALT1 TSL 2 BASIC15.56■□□□□ 0.08
RFX3P48380 CLEC16A-203ENST00000409790 6891 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
RFX3P48380 ITSN1-212ENST00000399367 5722 ntAPPRIS ALT1 TSL 1 (best) BASIC15.55■□□□□ 0.08
RFX3P48380 EPB41L3-203ENST00000400111 4259 ntTSL 5 BASIC15.55■□□□□ 0.08
RFX3P48380 MPPED1-202ENST00000417669 3657 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
RFX3P48380 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC15.55■□□□□ 0.08
RFX3P48380 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
RFX3P48380 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
RFX3P48380 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
RFX3P48380 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC15.55■□□□□ 0.08
RFX3P48380 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
RFX3P48380 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
RFX3P48380 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC15.55■□□□□ 0.08
RFX3P48380 SLC22A20-204ENST00000530038 1673 ntBASIC15.55■□□□□ 0.08
RFX3P48380 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
RFX3P48380 KIAA1211-203ENST00000504228 4628 ntAPPRIS P2 TSL 5 BASIC15.55■□□□□ 0.08
RFX3P48380 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC15.55■□□□□ 0.08
RFX3P48380 AC027601.1-201ENST00000575922 4506 ntTSL 2 BASIC15.55■□□□□ 0.08
RFX3P48380 AL353732.1-201ENST00000569618 1459 ntBASIC15.55■□□□□ 0.08
RFX3P48380 ATP6V0CP3-201ENST00000417255 467 ntBASIC15.55■□□□□ 0.08
RFX3P48380 CDK2AP2P3-201ENST00000422476 372 ntBASIC15.55■□□□□ 0.08
RFX3P48380 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC15.55■□□□□ 0.08
RFX3P48380 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC15.55■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 21.7 ms