Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
COL18A1P39060 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC21.33■■□□□ 1
COL18A1P39060 ERICH5-201ENST00000318528 1761 ntAPPRIS P3 TSL 1 (best) BASIC21.33■■□□□ 1
COL18A1P39060 OGDH-204ENST00000443864 1744 ntTSL 1 (best) BASIC21.32■■□□□ 1
COL18A1P39060 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC21.32■■□□□ 1
COL18A1P39060 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC21.32■■□□□ 1
COL18A1P39060 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC21.32■■□□□ 1
COL18A1P39060 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC21.32■■□□□ 1
COL18A1P39060 SP140L-204ENST00000444636 1781 ntTSL 5 BASIC21.32■■□□□ 1
COL18A1P39060 OR10H1-201ENST00000334920 1124 ntAPPRIS P1 BASIC21.32■■□□□ 1
COL18A1P39060 THEMIS2-204ENST00000373927 1082 ntTSL 1 (best) BASIC21.32■■□□□ 1
COL18A1P39060 MASP2-202ENST00000400898 726 ntTSL 1 (best) BASIC21.32■■□□□ 1
COL18A1P39060 FAM21FP-201ENST00000426241 1131 ntBASIC21.32■■□□□ 1
COL18A1P39060 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC21.32■■□□□ 1
COL18A1P39060 PTP4A1P2-201ENST00000546033 454 ntBASIC21.32■■□□□ 1
COL18A1P39060 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
COL18A1P39060 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC21.32■■□□□ 1
COL18A1P39060 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC21.32■■□□□ 1
COL18A1P39060 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC21.32■■□□□ 1
COL18A1P39060 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
COL18A1P39060 AC078925.2-201ENST00000624013 1973 ntBASIC21.32■■□□□ 1
COL18A1P39060 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC21.32■■□□□ 1
COL18A1P39060 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC21.32■■□□□ 1
COL18A1P39060 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC21.32■■□□□ 1
COL18A1P39060 ACP2-205ENST00000527256 1499 ntTSL 2 BASIC21.32■■□□□ 1
COL18A1P39060 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
COL18A1P39060 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC21.31■■□□□ 1
COL18A1P39060 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC21.31■■□□□ 1
COL18A1P39060 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC21.31■■□□□ 1
COL18A1P39060 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC21.31■■□□□ 1
COL18A1P39060 B9D2-201ENST00000243578 1027 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
COL18A1P39060 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
COL18A1P39060 ROPN1-202ENST00000405845 1007 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
COL18A1P39060 RFPL4A-201ENST00000434937 1035 ntAPPRIS P1 TSL 5 BASIC21.31■■□□□ 1
COL18A1P39060 AC009908.1-201ENST00000523030 412 ntTSL 3 BASIC21.31■■□□□ 1
COL18A1P39060 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC21.31■■□□□ 1
COL18A1P39060 AC012322.1-201ENST00000561657 861 ntTSL 3 BASIC21.31■■□□□ 1
COL18A1P39060 C2orf69P2-201ENST00000562032 1123 ntBASIC21.31■■□□□ 1
COL18A1P39060 AC084346.2-201ENST00000607097 949 ntBASIC21.31■■□□□ 1
COL18A1P39060 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
COL18A1P39060 TACR2-203ENST00000619173 1713 ntTSL 5 BASIC21.31■■□□□ 1
COL18A1P39060 LINC01144-201ENST00000626198 1710 ntBASIC21.31■■□□□ 1
COL18A1P39060 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
COL18A1P39060 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC21.31■■□□□ 1
COL18A1P39060 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
COL18A1P39060 AC139713.2-201ENST00000641328 2723 ntBASIC21.31■■□□□ 1
COL18A1P39060 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
COL18A1P39060 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
COL18A1P39060 KCNJ2-202ENST00000535240 1685 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
COL18A1P39060 FBLN7-203ENST00000409450 1394 ntTSL 1 (best) BASIC21.31■■□□□ 1
COL18A1P39060 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC21.31■■□□□ 1
COL18A1P39060 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
COL18A1P39060 HARS2-202ENST00000448069 1426 ntTSL 2 BASIC21.31■■□□□ 1
COL18A1P39060 MGST3-203ENST00000367885 680 ntTSL 2 BASIC21.31■■□□□ 1
COL18A1P39060 BCRP2-202ENST00000447763 634 ntBASIC21.31■■□□□ 1
COL18A1P39060 BCRP6-201ENST00000510112 632 ntBASIC21.31■■□□□ 1
COL18A1P39060 BCRP7-201ENST00000511549 544 ntBASIC21.31■■□□□ 1
COL18A1P39060 C12orf57-206ENST00000544681 980 ntTSL 2 BASIC21.31■■□□□ 1
COL18A1P39060 EMC4-209ENST00000559421 497 ntTSL 2 BASIC21.31■■□□□ 1
COL18A1P39060 DERL2-202ENST00000570848 657 ntTSL 5 BASIC21.31■■□□□ 1
COL18A1P39060 AC009134.1-201ENST00000571939 443 ntTSL 3 BASIC21.31■■□□□ 1
COL18A1P39060 CLUHP6-201ENST00000580789 941 ntBASIC21.31■■□□□ 1
COL18A1P39060 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC21.31■■□□□ 1
COL18A1P39060 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC21.31■■□□□ 1
COL18A1P39060 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC21.3■■□□□ 1
COL18A1P39060 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC21.3■■□□□ 1
COL18A1P39060 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC21.3■■□□□ 1
COL18A1P39060 AC005915.1-201ENST00000624912 2018 ntBASIC21.3■■□□□ 1
COL18A1P39060 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC21.3■■□□□ 1
COL18A1P39060 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC21.3■■□□□ 1
COL18A1P39060 RERG-209ENST00000546331 1383 ntTSL 2 BASIC21.3■■□□□ 1
COL18A1P39060 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
COL18A1P39060 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC21.3■■□□□ 1
COL18A1P39060 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
COL18A1P39060 BNIP3P1-202ENST00000550043 1585 ntBASIC21.3■■□□□ 1
COL18A1P39060 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC21.3■■□□□ 1
COL18A1P39060 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
COL18A1P39060 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
COL18A1P39060 FLT3LG-201ENST00000204637 1046 ntTSL 1 (best) BASIC21.3■■□□□ 1
COL18A1P39060 TPO-206ENST00000382269 1155 ntTSL 5 BASIC21.3■■□□□ 1
COL18A1P39060 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
COL18A1P39060 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC21.3■■□□□ 1
COL18A1P39060 RN7SL219P-201ENST00000582872 296 ntBASIC21.3■■□□□ 1
COL18A1P39060 AC097634.3-201ENST00000613067 820 ntTSL 3 BASIC21.3■■□□□ 1
COL18A1P39060 AL139099.5-201ENST00000635274 300 ntBASIC21.3■■□□□ 1
COL18A1P39060 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC21.3■■□□□ 1
COL18A1P39060 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC21.3■■□□□ 1
COL18A1P39060 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
COL18A1P39060 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
COL18A1P39060 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC21.29■■□□□ 1
COL18A1P39060 AC018685.1-201ENST00000457813 368 ntTSL 3 BASIC21.29■■□□□ 1
COL18A1P39060 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC21.29■■□□□ 1
COL18A1P39060 AC018653.3-202ENST00000538062 735 ntTSL 3 BASIC21.29■■□□□ 1
COL18A1P39060 TSR1-204ENST00000576112 1290 ntTSL 5 BASIC21.29■■□□□ 1
COL18A1P39060 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
COL18A1P39060 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC21.29■■□□□ 1
COL18A1P39060 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC21.29■■□□□ 1
COL18A1P39060 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC21.29■■□□□ 1
COL18A1P39060 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC21.29■■□□□ 1
COL18A1P39060 RHCE-205ENST00000349438 1235 ntTSL 1 (best) BASIC21.28■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 35 ms