Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 AC093326.2-201ENST00000640770 729 ntTSL 5 BASIC19.62■□□□□ 0.73
BRCA1P38398 U82695.1-201ENST00000635752 1889 ntBASIC19.62■□□□□ 0.73
BRCA1P38398 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC19.62■□□□□ 0.73
BRCA1P38398 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
BRCA1P38398 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC19.62■□□□□ 0.73
BRCA1P38398 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
BRCA1P38398 KATNA1-201ENST00000335643 1564 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
BRCA1P38398 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
BRCA1P38398 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
BRCA1P38398 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
BRCA1P38398 VSIG2-201ENST00000326621 1148 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
BRCA1P38398 SPAG11A-203ENST00000351436 534 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
BRCA1P38398 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
BRCA1P38398 SPAG11B-204ENST00000361111 534 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
BRCA1P38398 BTBD6P1-201ENST00000412176 1267 ntBASIC19.62■□□□□ 0.73
BRCA1P38398 AC005077.2-201ENST00000449786 690 ntBASIC19.62■□□□□ 0.73
BRCA1P38398 SDHD-202ENST00000525291 790 ntTSL 3 BASIC19.62■□□□□ 0.73
BRCA1P38398 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC19.62■□□□□ 0.73
BRCA1P38398 TNNT1-212ENST00000588981 1163 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
BRCA1P38398 GEMIN7-204ENST00000591747 576 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
BRCA1P38398 AL096828.3-201ENST00000615354 462 ntBASIC19.62■□□□□ 0.73
BRCA1P38398 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
BRCA1P38398 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC19.62■□□□□ 0.73
BRCA1P38398 ENO3-206ENST00000519584 1322 ntTSL 2 BASIC19.62■□□□□ 0.73
BRCA1P38398 SLC39A14-201ENST00000240095 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
BRCA1P38398 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
BRCA1P38398 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
BRCA1P38398 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC19.61■□□□□ 0.73
BRCA1P38398 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
BRCA1P38398 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
BRCA1P38398 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
BRCA1P38398 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC19.61■□□□□ 0.73
BRCA1P38398 RPS3-201ENST00000278572 907 ntTSL 3 BASIC19.61■□□□□ 0.73
BRCA1P38398 TEX29-201ENST00000283547 709 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
BRCA1P38398 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
BRCA1P38398 TSPO-201ENST00000329563 955 ntAPPRIS P1 TSL 3 BASIC19.61■□□□□ 0.73
BRCA1P38398 MTHFSD-202ENST00000381214 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
BRCA1P38398 AL662890.1-201ENST00000396818 632 ntBASIC19.61■□□□□ 0.73
BRCA1P38398 HSPC324-201ENST00000411904 557 ntTSL 2 BASIC19.61■□□□□ 0.73
BRCA1P38398 AC012506.3-201ENST00000415245 892 ntTSL 3 BASIC19.61■□□□□ 0.73
BRCA1P38398 LINC02028-203ENST00000443776 453 ntTSL 3 BASIC19.61■□□□□ 0.73
BRCA1P38398 HSPB1P2-201ENST00000448722 546 ntBASIC19.61■□□□□ 0.73
BRCA1P38398 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC19.61■□□□□ 0.73
BRCA1P38398 SLED1-202ENST00000512051 380 ntBASIC19.61■□□□□ 0.73
BRCA1P38398 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC19.61■□□□□ 0.73
BRCA1P38398 TSPO-206ENST00000583777 636 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
BRCA1P38398 AC138951.2-201ENST00000623455 1161 ntBASIC19.61■□□□□ 0.73
BRCA1P38398 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
BRCA1P38398 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
BRCA1P38398 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
BRCA1P38398 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC19.61■□□□□ 0.73
BRCA1P38398 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
BRCA1P38398 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
BRCA1P38398 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC19.61■□□□□ 0.73
BRCA1P38398 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
BRCA1P38398 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
BRCA1P38398 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
BRCA1P38398 FAM3B-203ENST00000398647 864 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
BRCA1P38398 FAM3B-204ENST00000398652 1125 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
BRCA1P38398 AC083949.1-201ENST00000422013 657 ntTSL 3 BASIC19.6■□□□□ 0.73
BRCA1P38398 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC19.6■□□□□ 0.73
BRCA1P38398 BX284668.4-201ENST00000453917 508 ntBASIC19.6■□□□□ 0.73
BRCA1P38398 AC083949.1-202ENST00000458490 552 ntTSL 3 BASIC19.6■□□□□ 0.73
BRCA1P38398 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC19.6■□□□□ 0.73
BRCA1P38398 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
BRCA1P38398 ZNF815P-201ENST00000421890 1352 ntTSL 2 BASIC19.6■□□□□ 0.73
BRCA1P38398 KLK6-203ENST00000391808 1478 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
BRCA1P38398 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC19.6■□□□□ 0.73
BRCA1P38398 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC19.6■□□□□ 0.73
BRCA1P38398 P2RY4-201ENST00000374519 1595 ntAPPRIS P1 BASIC19.6■□□□□ 0.73
BRCA1P38398 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
BRCA1P38398 ARRB2-204ENST00000412477 1779 ntTSL 2 BASIC19.6■□□□□ 0.73
BRCA1P38398 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
BRCA1P38398 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
BRCA1P38398 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC19.6■□□□□ 0.73
BRCA1P38398 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
BRCA1P38398 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
BRCA1P38398 PPP1R14B-202ENST00000392210 600 ntTSL 3 BASIC19.6■□□□□ 0.73
BRCA1P38398 LINC01088-201ENST00000437737 973 ntTSL 5 BASIC19.6■□□□□ 0.73
BRCA1P38398 CXorf40A-211ENST00000450602 1204 ntAPPRIS P3 TSL 3 BASIC19.6■□□□□ 0.73
BRCA1P38398 RPSAP36-202ENST00000494591 1261 ntBASIC19.6■□□□□ 0.73
BRCA1P38398 LEF1-AS1-204ENST00000508266 559 ntTSL 4 BASIC19.6■□□□□ 0.73
BRCA1P38398 NIP7-208ENST00000569637 1099 ntTSL 2 BASIC19.6■□□□□ 0.73
BRCA1P38398 IFT20-206ENST00000578122 834 ntTSL 2 BASIC19.6■□□□□ 0.73
BRCA1P38398 IFT20-208ENST00000578985 831 ntTSL 3 BASIC19.6■□□□□ 0.73
BRCA1P38398 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC19.6■□□□□ 0.73
BRCA1P38398 AC020914.3-201ENST00000594712 304 ntBASIC19.6■□□□□ 0.73
BRCA1P38398 NDUFV2P1-201ENST00000596415 907 ntBASIC19.6■□□□□ 0.73
BRCA1P38398 UCP3-202ENST00000426995 1406 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
BRCA1P38398 PRR19-201ENST00000341747 1530 ntAPPRIS P2 TSL 5 BASIC19.6■□□□□ 0.73
BRCA1P38398 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
BRCA1P38398 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
BRCA1P38398 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC19.6■□□□□ 0.73
BRCA1P38398 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
BRCA1P38398 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
BRCA1P38398 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
BRCA1P38398 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC19.6■□□□□ 0.73
BRCA1P38398 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC19.6■□□□□ 0.73
BRCA1P38398 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC19.59■□□□□ 0.73
BRCA1P38398 AC008764.6-201ENST00000595909 2069 ntBASIC19.59■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 55.7 ms