Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 HNRNPA1-202ENST00000340913 1842 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
MSX2P35548 BTBD11-204ENST00000420571 3478 ntTSL 5 BASIC15.8■□□□□ 0.12
MSX2P35548 AC099063.4-201ENST00000641099 1602 ntBASIC15.8■□□□□ 0.12
MSX2P35548 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
MSX2P35548 TP73-AS1-210ENST00000637775 1455 ntBASIC15.8■□□□□ 0.12
MSX2P35548 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
MSX2P35548 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
MSX2P35548 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
MSX2P35548 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
MSX2P35548 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC15.8■□□□□ 0.12
MSX2P35548 PPM1E-201ENST00000308249 6542 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
MSX2P35548 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC15.8■□□□□ 0.12
MSX2P35548 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
MSX2P35548 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC15.8■□□□□ 0.12
MSX2P35548 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC15.8■□□□□ 0.12
MSX2P35548 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC15.8■□□□□ 0.12
MSX2P35548 AL645929.1-201ENST00000420084 975 ntBASIC15.8■□□□□ 0.12
MSX2P35548 LINC00982-205ENST00000420957 435 ntBASIC15.8■□□□□ 0.12
MSX2P35548 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC15.8■□□□□ 0.12
MSX2P35548 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC15.8■□□□□ 0.12
MSX2P35548 GFOD1-203ENST00000379287 8751 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
MSX2P35548 VTN-201ENST00000226218 2149 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
MSX2P35548 GJB6-202ENST00000356192 2131 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
MSX2P35548 SHROOM1-201ENST00000319854 3190 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
MSX2P35548 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
MSX2P35548 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC15.8■□□□□ 0.12
MSX2P35548 F2RL1-201ENST00000296677 2914 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
MSX2P35548 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC15.8■□□□□ 0.12
MSX2P35548 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC15.8■□□□□ 0.12
MSX2P35548 FKBP5-201ENST00000357266 3772 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
MSX2P35548 CPEB2-201ENST00000259997 5612 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
MSX2P35548 DUS2-202ENST00000432752 1864 ntTSL 2 BASIC15.8■□□□□ 0.12
MSX2P35548 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
MSX2P35548 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC15.8■□□□□ 0.12
MSX2P35548 GPN1-212ENST00000616939 1832 ntAPPRIS P2 TSL 1 (best) BASIC15.8■□□□□ 0.12
MSX2P35548 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC15.8■□□□□ 0.12
MSX2P35548 SLC30A5-209ENST00000621204 3999 ntTSL 5 BASIC15.79■□□□□ 0.12
MSX2P35548 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC15.79■□□□□ 0.12
MSX2P35548 PCED1B-202ENST00000546455 2328 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
MSX2P35548 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
MSX2P35548 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
MSX2P35548 TBX5-203ENST00000405440 2203 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
MSX2P35548 PC-214ENST00000628663 1470 ntTSL 5 BASIC15.79■□□□□ 0.12
MSX2P35548 PGBD5-201ENST00000391860 10961 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
MSX2P35548 GNB4-201ENST00000232564 6434 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
MSX2P35548 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC15.79■□□□□ 0.12
MSX2P35548 ZCCHC4-201ENST00000302874 2785 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
MSX2P35548 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
MSX2P35548 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC15.79■□□□□ 0.12
MSX2P35548 CROCC-201ENST00000375541 6656 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
MSX2P35548 CNKSR1-201ENST00000361530 2625 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
MSX2P35548 TRAF6-201ENST00000348124 2558 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
MSX2P35548 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
MSX2P35548 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC15.79■□□□□ 0.12
MSX2P35548 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC15.79■□□□□ 0.12
MSX2P35548 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
MSX2P35548 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
MSX2P35548 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
MSX2P35548 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
MSX2P35548 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC15.79■□□□□ 0.12
MSX2P35548 CLN6-204ENST00000564752 900 ntTSL 3 BASIC15.79■□□□□ 0.12
MSX2P35548 AC090616.6-201ENST00000582640 721 ntBASIC15.79■□□□□ 0.12
MSX2P35548 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC15.79■□□□□ 0.12
MSX2P35548 CLN6-214ENST00000636314 442 ntTSL 3 BASIC15.79■□□□□ 0.12
MSX2P35548 MAP4K5-201ENST00000013125 4354 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
MSX2P35548 GLUL-202ENST00000331872 4364 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
MSX2P35548 CLN5-208ENST00000636183 6664 ntAPPRIS P2 TSL 1 (best) BASIC15.79■□□□□ 0.12
MSX2P35548 PHTF1-202ENST00000369598 3000 ntTSL 5 BASIC15.79■□□□□ 0.12
MSX2P35548 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
MSX2P35548 TTBK1-201ENST00000259750 6932 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
MSX2P35548 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC15.79■□□□□ 0.12
MSX2P35548 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC15.79■□□□□ 0.12
MSX2P35548 SSR4P1-203ENST00000599569 2260 ntBASIC15.79■□□□□ 0.12
MSX2P35548 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC15.79■□□□□ 0.12
MSX2P35548 AC006058.4-201ENST00000624016 1670 ntBASIC15.79■□□□□ 0.12
MSX2P35548 ARVCF-202ENST00000401994 2700 ntTSL 5 BASIC15.79■□□□□ 0.12
MSX2P35548 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC15.79■□□□□ 0.12
MSX2P35548 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC15.79■□□□□ 0.12
MSX2P35548 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
MSX2P35548 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
MSX2P35548 PLCB1-203ENST00000378641 7323 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
MSX2P35548 AC023157.3-201ENST00000619086 2088 ntBASIC15.79■□□□□ 0.12
MSX2P35548 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC15.78■□□□□ 0.12
MSX2P35548 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC15.78■□□□□ 0.12
MSX2P35548 TFAP2B-202ENST00000393655 5773 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
MSX2P35548 AC073508.3-201ENST00000619697 1419 ntBASIC15.78■□□□□ 0.12
MSX2P35548 SLC4A9-203ENST00000506545 2838 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
MSX2P35548 CRB2-201ENST00000359999 3659 ntTSL 2 BASIC15.78■□□□□ 0.12
MSX2P35548 TDRD6-201ENST00000316081 6817 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
MSX2P35548 AC027601.1-201ENST00000575922 4506 ntTSL 2 BASIC15.78■□□□□ 0.12
MSX2P35548 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
MSX2P35548 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
MSX2P35548 CYP4F22-201ENST00000269703 2641 ntAPPRIS P1 TSL 2 BASIC15.78■□□□□ 0.12
MSX2P35548 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
MSX2P35548 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
MSX2P35548 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC15.78■□□□□ 0.12
MSX2P35548 AC113347.1-201ENST00000413321 391 ntBASIC15.78■□□□□ 0.12
MSX2P35548 AL020989.1-201ENST00000422979 469 ntBASIC15.78■□□□□ 0.12
MSX2P35548 AL596275.1-201ENST00000423464 877 ntBASIC15.78■□□□□ 0.12
MSX2P35548 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 31.6 ms