Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 AC011447.3-204ENST00000585498 883 ntTSL 2 BASIC19.1■□□□□ 0.65
SCN4AP35499 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
SCN4AP35499 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC19.1■□□□□ 0.65
SCN4AP35499 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
SCN4AP35499 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
SCN4AP35499 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
SCN4AP35499 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
SCN4AP35499 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
SCN4AP35499 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
SCN4AP35499 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC19.09■□□□□ 0.65
SCN4AP35499 UBE3B-212ENST00000540230 1541 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
SCN4AP35499 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
SCN4AP35499 IP6K2-202ENST00000340879 1185 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
SCN4AP35499 C1orf210-201ENST00000423420 629 ntAPPRIS P1 TSL 3 BASIC19.09■□□□□ 0.65
SCN4AP35499 AL451042.2-201ENST00000424774 904 ntTSL 2 BASIC19.09■□□□□ 0.65
SCN4AP35499 LINC01088-201ENST00000437737 973 ntTSL 5 BASIC19.09■□□□□ 0.65
SCN4AP35499 AC096536.1-201ENST00000443284 440 ntTSL 2 BASIC19.09■□□□□ 0.65
SCN4AP35499 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC19.09■□□□□ 0.65
SCN4AP35499 FBXL8-208ENST00000521920 574 ntTSL 4 BASIC19.09■□□□□ 0.65
SCN4AP35499 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC19.09■□□□□ 0.65
SCN4AP35499 HNRNPA1P48-202ENST00000565308 961 ntBASIC19.09■□□□□ 0.65
SCN4AP35499 IFITM3-204ENST00000602735 713 ntAPPRIS ALT1 TSL 5 BASIC19.09■□□□□ 0.65
SCN4AP35499 AL445288.1-201ENST00000610846 654 ntTSL 4 BASIC19.09■□□□□ 0.65
SCN4AP35499 RHBDF1P1-201ENST00000427504 1941 ntBASIC19.09■□□□□ 0.65
SCN4AP35499 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
SCN4AP35499 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
SCN4AP35499 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC19.09■□□□□ 0.65
SCN4AP35499 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC19.09■□□□□ 0.65
SCN4AP35499 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
SCN4AP35499 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
SCN4AP35499 UBE3B-201ENST00000340074 1448 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
SCN4AP35499 USE1-206ENST00000595101 1776 ntTSL 2 BASIC19.09■□□□□ 0.65
SCN4AP35499 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
SCN4AP35499 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC19.09■□□□□ 0.65
SCN4AP35499 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
SCN4AP35499 BST2-201ENST00000252593 1019 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
SCN4AP35499 BX284668.4-201ENST00000453917 508 ntBASIC19.09■□□□□ 0.65
SCN4AP35499 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC19.09■□□□□ 0.65
SCN4AP35499 LGALS3BP-202ENST00000585407 936 ntTSL 2 BASIC19.09■□□□□ 0.65
SCN4AP35499 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC19.09■□□□□ 0.65
SCN4AP35499 U62317.3-201ENST00000608319 855 ntBASIC19.09■□□□□ 0.65
SCN4AP35499 LINC00969-254ENST00000625358 962 ntTSL 5 BASIC19.09■□□□□ 0.65
SCN4AP35499 ABCC9-203ENST00000326684 1693 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
SCN4AP35499 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
SCN4AP35499 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
SCN4AP35499 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
SCN4AP35499 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC19.08■□□□□ 0.65
SCN4AP35499 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
SCN4AP35499 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
SCN4AP35499 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC19.08■□□□□ 0.65
SCN4AP35499 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC19.08■□□□□ 0.65
SCN4AP35499 SLC39A14-201ENST00000240095 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.64
SCN4AP35499 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
SCN4AP35499 LCN9-201ENST00000277526 531 ntAPPRIS P2 TSL 5 BASIC19.08■□□□□ 0.64
SCN4AP35499 TMEM256-201ENST00000302422 486 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
SCN4AP35499 LSM10-201ENST00000315732 850 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
SCN4AP35499 FAM3B-203ENST00000398647 864 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.64
SCN4AP35499 FAM3B-204ENST00000398652 1125 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
SCN4AP35499 AC074338.1-201ENST00000416825 156 ntBASIC19.08■□□□□ 0.64
SCN4AP35499 LINC02028-203ENST00000443776 453 ntTSL 3 BASIC19.08■□□□□ 0.64
SCN4AP35499 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC19.08■□□□□ 0.64
SCN4AP35499 TMBIM4-205ENST00000535812 766 ntTSL 4 BASIC19.08■□□□□ 0.64
SCN4AP35499 TMBIM4-212ENST00000556010 610 ntTSL 5 BASIC19.08■□□□□ 0.64
SCN4AP35499 NDUFV2P1-201ENST00000596415 907 ntBASIC19.08■□□□□ 0.64
SCN4AP35499 LCN9-204ENST00000619315 528 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.64
SCN4AP35499 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
SCN4AP35499 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC19.08■□□□□ 0.64
SCN4AP35499 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
SCN4AP35499 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC19.08■□□□□ 0.64
SCN4AP35499 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
SCN4AP35499 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
SCN4AP35499 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC19.08■□□□□ 0.64
SCN4AP35499 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
SCN4AP35499 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
SCN4AP35499 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC19.08■□□□□ 0.64
SCN4AP35499 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
SCN4AP35499 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC19.07■□□□□ 0.64
SCN4AP35499 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC19.07■□□□□ 0.64
SCN4AP35499 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC19.07■□□□□ 0.64
SCN4AP35499 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC19.07■□□□□ 0.64
SCN4AP35499 SAP30L-202ENST00000426761 777 ntTSL 3 BASIC19.07■□□□□ 0.64
SCN4AP35499 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC19.07■□□□□ 0.64
SCN4AP35499 FANCA-204ENST00000534992 1088 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
SCN4AP35499 ST8SIA2-202ENST00000539113 1089 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
SCN4AP35499 MIF4GD-206ENST00000579119 856 ntTSL 3 BASIC19.07■□□□□ 0.64
SCN4AP35499 CROCCP3-204ENST00000590118 574 ntTSL 4 BASIC19.07■□□□□ 0.64
SCN4AP35499 GEMIN7-204ENST00000591747 576 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
SCN4AP35499 MFSD11-218ENST00000591864 446 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
SCN4AP35499 AC008743.1-201ENST00000596350 813 ntTSL 4 BASIC19.07■□□□□ 0.64
SCN4AP35499 ENO3-206ENST00000519584 1322 ntTSL 2 BASIC19.07■□□□□ 0.64
SCN4AP35499 LY9-204ENST00000368039 1364 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
SCN4AP35499 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC19.07■□□□□ 0.64
SCN4AP35499 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC19.07■□□□□ 0.64
SCN4AP35499 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC19.07■□□□□ 0.64
SCN4AP35499 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
SCN4AP35499 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC19.07■□□□□ 0.64
SCN4AP35499 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
SCN4AP35499 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC19.07■□□□□ 0.64
SCN4AP35499 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
SCN4AP35499 TCEAL1-203ENST00000372626 721 ntAPPRIS P1 TSL 2 BASIC19.07■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 70.9 ms