Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
PTPN4P29074 TNFRSF14-AS1-202ENST00000432521 3608 ntTSL 2 BASIC16.64■□□□□ 0.25
PTPN4P29074 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC16.64■□□□□ 0.25
PTPN4P29074 ADGRA1-AS1-202ENST00000444433 2646 ntTSL 3 BASIC16.64■□□□□ 0.25
PTPN4P29074 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
PTPN4P29074 RAB1A-203ENST00000409784 2447 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
PTPN4P29074 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
PTPN4P29074 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
PTPN4P29074 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC16.63■□□□□ 0.25
PTPN4P29074 PLCB1-201ENST00000338037 7092 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
PTPN4P29074 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
PTPN4P29074 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
PTPN4P29074 ZNF180-202ENST00000391956 3049 ntAPPRIS ALT2 TSL 2 BASIC16.63■□□□□ 0.25
PTPN4P29074 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
PTPN4P29074 POMT1-205ENST00000404875 2821 ntTSL 2 BASIC16.63■□□□□ 0.25
PTPN4P29074 ASTN2-201ENST00000288520 2356 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
PTPN4P29074 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC16.63■□□□□ 0.25
PTPN4P29074 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
PTPN4P29074 AC022532.1-201ENST00000624563 1728 ntBASIC16.63■□□□□ 0.25
PTPN4P29074 PPP1R21-201ENST00000281394 3137 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
PTPN4P29074 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
PTPN4P29074 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
PTPN4P29074 MED15P5-201ENST00000423150 992 ntBASIC16.63■□□□□ 0.25
PTPN4P29074 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC16.63■□□□□ 0.25
PTPN4P29074 AL591424.1-201ENST00000442569 1213 ntBASIC16.63■□□□□ 0.25
PTPN4P29074 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC16.63■□□□□ 0.25
PTPN4P29074 BX005266.1-201ENST00000473402 457 ntBASIC16.63■□□□□ 0.25
PTPN4P29074 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
PTPN4P29074 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
PTPN4P29074 AC034105.1-201ENST00000563488 319 ntBASIC16.63■□□□□ 0.25
PTPN4P29074 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC16.63■□□□□ 0.25
PTPN4P29074 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC16.63■□□□□ 0.25
PTPN4P29074 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
PTPN4P29074 AD001527.2-201ENST00000622994 785 ntBASIC16.63■□□□□ 0.25
PTPN4P29074 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC16.63■□□□□ 0.25
PTPN4P29074 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC16.63■□□□□ 0.25
PTPN4P29074 RBFOX1-212ENST00000550418 4775 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
PTPN4P29074 LINC02551-202ENST00000533812 2203 ntTSL 5 BASIC16.63■□□□□ 0.25
PTPN4P29074 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
PTPN4P29074 TSC2-201ENST00000219476 6156 ntAPPRIS P3 TSL 5 BASIC16.63■□□□□ 0.25
PTPN4P29074 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
PTPN4P29074 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
PTPN4P29074 WDTC1-202ENST00000361771 4275 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
PTPN4P29074 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
PTPN4P29074 PC-208ENST00000529047 1607 ntTSL 3 BASIC16.63■□□□□ 0.25
PTPN4P29074 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC16.63■□□□□ 0.25
PTPN4P29074 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
PTPN4P29074 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
PTPN4P29074 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
PTPN4P29074 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
PTPN4P29074 DPP6-203ENST00000404039 4798 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
PTPN4P29074 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC16.62■□□□□ 0.25
PTPN4P29074 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
PTPN4P29074 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
PTPN4P29074 SNAP91-205ENST00000439399 4452 ntAPPRIS P2 TSL 5 BASIC16.62■□□□□ 0.25
PTPN4P29074 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC16.62■□□□□ 0.25
PTPN4P29074 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
PTPN4P29074 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
PTPN4P29074 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
PTPN4P29074 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
PTPN4P29074 LBH-204ENST00000406087 559 ntTSL 4 BASIC16.62■□□□□ 0.25
PTPN4P29074 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC16.62■□□□□ 0.25
PTPN4P29074 AC103564.2-201ENST00000432853 1299 ntBASIC16.62■□□□□ 0.25
PTPN4P29074 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC16.62■□□□□ 0.25
PTPN4P29074 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC16.62■□□□□ 0.25
PTPN4P29074 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC16.62■□□□□ 0.25
PTPN4P29074 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC16.62■□□□□ 0.25
PTPN4P29074 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC16.62■□□□□ 0.25
PTPN4P29074 AC140113.2-201ENST00000604370 208 ntBASIC16.62■□□□□ 0.25
PTPN4P29074 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
PTPN4P29074 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC16.62■□□□□ 0.25
PTPN4P29074 ZMIZ1-201ENST00000334512 7546 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
PTPN4P29074 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC16.62■□□□□ 0.25
PTPN4P29074 CRAMP1-201ENST00000293925 7671 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
PTPN4P29074 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
PTPN4P29074 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
PTPN4P29074 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
PTPN4P29074 ROBO3-201ENST00000397801 4569 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
PTPN4P29074 ROBO3-220ENST00000538940 4551 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
PTPN4P29074 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
PTPN4P29074 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC16.62■□□□□ 0.25
PTPN4P29074 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
PTPN4P29074 TPPP-201ENST00000360578 6022 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
PTPN4P29074 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
PTPN4P29074 AC091100.1-201ENST00000558424 2354 ntTSL 2 BASIC16.62■□□□□ 0.25
PTPN4P29074 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
PTPN4P29074 DMTN-206ENST00000443491 2415 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
PTPN4P29074 LRRFIP1-201ENST00000244815 4370 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
PTPN4P29074 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
PTPN4P29074 MARCH4-201ENST00000273067 4447 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
PTPN4P29074 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC16.61■□□□□ 0.25
PTPN4P29074 ASCC3-207ENST00000522650 2828 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
PTPN4P29074 GCLM-201ENST00000370238 4857 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
PTPN4P29074 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
PTPN4P29074 PTCH1-201ENST00000331920 8057 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
PTPN4P29074 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC16.61■□□□□ 0.25
PTPN4P29074 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
PTPN4P29074 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
PTPN4P29074 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
PTPN4P29074 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 59.1 ms