Protein–RNA interactions for Protein: P28702

RXRB, Retinoic acid receptor RXR-beta, humanhuman

Predictions only

Length 533 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RXRBP28702 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC21.17■□□□□ 0.98
RXRBP28702 KRT8P39-201ENST00000396270 1433 ntBASIC21.17■□□□□ 0.98
RXRBP28702 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
RXRBP28702 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
RXRBP28702 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
RXRBP28702 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC21.17■□□□□ 0.98
RXRBP28702 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC21.17■□□□□ 0.98
RXRBP28702 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
RXRBP28702 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
RXRBP28702 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC21.17■□□□□ 0.98
RXRBP28702 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
RXRBP28702 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
RXRBP28702 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
RXRBP28702 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
RXRBP28702 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
RXRBP28702 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC21.16■□□□□ 0.98
RXRBP28702 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
RXRBP28702 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC21.16■□□□□ 0.98
RXRBP28702 SH3PXD2B-203ENST00000519643 1394 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
RXRBP28702 LCN9-201ENST00000277526 531 ntAPPRIS P2 TSL 5 BASIC21.16■□□□□ 0.98
RXRBP28702 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC21.16■□□□□ 0.98
RXRBP28702 SFT2D2-202ENST00000367829 491 ntTSL 5 BASIC21.16■□□□□ 0.98
RXRBP28702 S100A2-203ENST00000368709 457 ntAPPRIS P1 TSL 3 BASIC21.16■□□□□ 0.98
RXRBP28702 LYPLA2-202ENST00000374502 1072 ntTSL 2 BASIC21.16■□□□□ 0.98
RXRBP28702 AC098935.1-201ENST00000446057 611 ntBASIC21.16■□□□□ 0.98
RXRBP28702 HSPB1P2-201ENST00000448722 546 ntBASIC21.16■□□□□ 0.98
RXRBP28702 AC078785.1-203ENST00000467342 573 ntTSL 4 BASIC21.16■□□□□ 0.98
RXRBP28702 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
RXRBP28702 AC125604.1-201ENST00000496255 707 ntBASIC21.16■□□□□ 0.98
RXRBP28702 NUP210P1-202ENST00000504322 710 ntBASIC21.16■□□□□ 0.98
RXRBP28702 AL136309.4-201ENST00000527831 640 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
RXRBP28702 ARL2-204ENST00000529384 830 ntAPPRIS P1 TSL 3 BASIC21.16■□□□□ 0.98
RXRBP28702 C14orf132-202ENST00000553782 536 ntTSL 4 BASIC21.16■□□□□ 0.98
RXRBP28702 AL163636.1-201ENST00000554286 915 ntTSL 5 BASIC21.16■□□□□ 0.98
RXRBP28702 AC108134.3-202ENST00000571404 1207 ntTSL 5 BASIC21.16■□□□□ 0.98
RXRBP28702 PAM16-215ENST00000577031 548 ntTSL 4 BASIC21.16■□□□□ 0.98
RXRBP28702 NAT9-212ENST00000581136 1011 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
RXRBP28702 STPG3-204ENST00000611378 1015 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
RXRBP28702 LCN9-204ENST00000619315 528 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
RXRBP28702 AC091544.8-201ENST00000619490 361 ntBASIC21.16■□□□□ 0.98
RXRBP28702 MEF2C-227ENST00000626391 1182 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
RXRBP28702 MEF2C-231ENST00000628656 1254 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
RXRBP28702 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
RXRBP28702 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
RXRBP28702 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
RXRBP28702 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
RXRBP28702 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
RXRBP28702 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC21.16■□□□□ 0.98
RXRBP28702 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
RXRBP28702 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC21.15■□□□□ 0.98
RXRBP28702 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
RXRBP28702 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
RXRBP28702 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
RXRBP28702 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
RXRBP28702 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC21.15■□□□□ 0.98
RXRBP28702 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
RXRBP28702 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
RXRBP28702 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
RXRBP28702 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC21.15■□□□□ 0.98
RXRBP28702 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
RXRBP28702 FBXO8-202ENST00000503293 1546 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
RXRBP28702 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
RXRBP28702 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC21.15■□□□□ 0.98
RXRBP28702 AC116562.4-201ENST00000641316 2276 ntBASIC21.15■□□□□ 0.98
RXRBP28702 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC21.15■□□□□ 0.98
RXRBP28702 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
RXRBP28702 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
RXRBP28702 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
RXRBP28702 ATP5H-201ENST00000301587 603 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
RXRBP28702 C6orf136-202ENST00000376471 614 ntTSL 3 BASIC21.15■□□□□ 0.98
RXRBP28702 CST9L-201ENST00000376979 959 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
RXRBP28702 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
RXRBP28702 DNAJC27-AS1-207ENST00000451291 488 ntTSL 3 BASIC21.15■□□□□ 0.98
RXRBP28702 AC018680.1-202ENST00000500324 525 ntTSL 3 BASIC21.15■□□□□ 0.98
RXRBP28702 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
RXRBP28702 GUSBP1-202ENST00000508260 1012 ntTSL 2 BASIC21.15■□□□□ 0.98
RXRBP28702 AP001790.1-201ENST00000511947 570 ntTSL 4 BASIC21.15■□□□□ 0.98
RXRBP28702 NPM1P43-201ENST00000558669 786 ntBASIC21.15■□□□□ 0.98
RXRBP28702 AC136475.1-202ENST00000602429 1151 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
RXRBP28702 AC132938.4-201ENST00000623835 848 ntBASIC21.15■□□□□ 0.98
RXRBP28702 LINC00595-217ENST00000635545 549 ntTSL 4 BASIC21.15■□□□□ 0.98
RXRBP28702 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
RXRBP28702 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC21.15■□□□□ 0.98
RXRBP28702 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC21.15■□□□□ 0.98
RXRBP28702 AP4M1-201ENST00000359593 1817 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
RXRBP28702 AP4M1-206ENST00000429084 1836 ntTSL 5 BASIC21.15■□□□□ 0.98
RXRBP28702 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
RXRBP28702 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC21.15■□□□□ 0.98
RXRBP28702 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC21.15■□□□□ 0.98
RXRBP28702 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC21.14■□□□□ 0.98
RXRBP28702 C7orf33-201ENST00000307003 1354 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
RXRBP28702 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
RXRBP28702 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC21.14■□□□□ 0.98
RXRBP28702 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC21.14■□□□□ 0.97
RXRBP28702 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
RXRBP28702 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC21.14■□□□□ 0.97
RXRBP28702 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC21.14■□□□□ 0.97
RXRBP28702 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC21.14■□□□□ 0.97
RXRBP28702 MRPS22-201ENST00000310776 1120 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.97
RXRBP28702 GNG5-201ENST00000370641 920 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 38.9 ms